KEGG   PATHWAY: bng00020
Entry
bng00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Brenneria nigrifluens
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bng00020  Citrate cycle (TCA cycle)
bng00020

Module
bng_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bng00020]
bng_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bng00020]
bng_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bng00020]
bng_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bng00020]
bng_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bng00020]
Other DBs
GO: 0006099
Organism
Brenneria nigrifluens [GN:bng]
Gene
EH206_01895  citrate synthase [KO:K01647] [EC:2.3.3.1]
EH206_15560  citrate synthase [KO:K01647] [EC:2.3.3.1]
EH206_11480  acnA; aconitate hydratase AcnA [KO:K27802] [EC:4.2.1.3 4.2.1.99]
EH206_03760  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
EH206_12020  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
EH206_15535  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
EH206_15530  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
EH206_03675  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EH206_15520  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
EH206_15525  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
EH206_15545  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
EH206_15540  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
EH206_15555  succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
EH206_15550  succinate dehydrogenase membrane anchor subunit [KO:K00242]
EH206_08775  FAD-binding protein [KO:K00244] [EC:1.3.5.1]
EH206_02555  fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
EH206_08760  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
EH206_02550  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
EH206_08765  succinate dehydrogenase [KO:K00246]
EH206_02545  frdC; fumarate reductase subunit FrdC [KO:K00246]
EH206_08770  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00247]
EH206_02540  frdD; fumarate reductase subunit FrdD [KO:K00247]
EH206_18000  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
EH206_10710  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
EH206_18940  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
EH206_06720  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
EH206_01940  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
EH206_03665  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
EH206_03670  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
EH206_14840  porA; pyruvate ferredoxin oxidoreductase [KO:K00169] [EC:1.2.7.1]
EH206_14835  pyruvate synthase subunit beta [KO:K00170] [EC:1.2.7.1]
EH206_14850  hypothetical protein [KO:K00172] [EC:1.2.7.1]
EH206_14845  hypothetical protein [KO:K00171] [EC:1.2.7.1]
EH206_18205  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bng00010  Glycolysis / Gluconeogenesis
bng00053  Ascorbate and aldarate metabolism
bng00061  Fatty acid biosynthesis
bng00071  Fatty acid degradation
bng00190  Oxidative phosphorylation
bng00220  Arginine biosynthesis
bng00250  Alanine, aspartate and glutamate metabolism
bng00280  Valine, leucine and isoleucine degradation
bng00350  Tyrosine metabolism
bng00470  D-Amino acid metabolism
bng00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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