KEGG   PATHWAY: boi00020
Entry
boi00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Bosea sp. Tri-49
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
boi00020  Citrate cycle (TCA cycle)
boi00020

Module
boi_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:boi00020]
boi_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:boi00020]
boi_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:boi00020]
boi_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:boi00020]
boi_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:boi00020]
Other DBs
GO: 0006099
Organism
Bosea sp. Tri-49 [GN:boi]
Gene
BLM15_15565  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
BLM15_15570  citrate synthase [KO:K01647] [EC:2.3.3.1]
BLM15_05720  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
BLM15_21700  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
BLM15_10905  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
BLM15_02360  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BLM15_26790  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
BLM15_26795  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
BLM15_26810  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BLM15_22910  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BLM15_06505  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BLM15_26785  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
BLM15_12085  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
BLM15_12130  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
BLM15_26780  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
BLM15_12080  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
BLM15_12135  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
BLM15_22600  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BLM15_22605  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
BLM15_22590  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
BLM15_22595  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
BLM15_16340  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
BLM15_24360  fumarate hydratase [KO:K01677] [EC:4.2.1.2]
BLM15_24365  hypothetical protein [KO:K01678] [EC:4.2.1.2]
BLM15_26145  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
BLM15_01580  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
BLM15_26775  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BLM15_20940  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
BLM15_25945  transketolase [KO:K00163] [EC:1.2.4.1]
BLM15_06525  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
BLM15_06520  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
BLM15_06515  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
boi00010  Glycolysis / Gluconeogenesis
boi00053  Ascorbate and aldarate metabolism
boi00061  Fatty acid biosynthesis
boi00071  Fatty acid degradation
boi00190  Oxidative phosphorylation
boi00220  Arginine biosynthesis
boi00250  Alanine, aspartate and glutamate metabolism
boi00280  Valine, leucine and isoleucine degradation
boi00350  Tyrosine metabolism
boi00470  D-Amino acid metabolism
boi00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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