KEGG   PATHWAY: bop00020
Entry
bop00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Bosea sp. PAMC 26642
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bop00020  Citrate cycle (TCA cycle)
bop00020

Module
bop_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bop00020]
bop_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bop00020]
bop_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bop00020]
bop_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bop00020]
bop_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bop00020]
Other DBs
GO: 0006099
Organism
Bosea sp. PAMC 26642 [GN:bop]
Gene
AXW83_07145  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
AXW83_19025  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
AXW83_09715  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AXW83_16100  sucA; 2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
AXW83_16105  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
AXW83_07545  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AXW83_16120  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
AXW83_16095  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
AXW83_16090  sucC; succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
AXW83_18700  fumarate reductase [KO:K00239] [EC:1.3.5.1]
AXW83_18710  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
AXW83_18690  succinate dehydrogenase [KO:K00241]
AXW83_18695  succinate dehydrogenase [KO:K00242]
AXW83_25005  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
AXW83_10180  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
AXW83_16085  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AXW83_20770  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
AXW83_18780  transketolase [KO:K00163] [EC:1.2.4.1]
AXW83_07565  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
AXW83_07560  pyruvate dehydrogenase [KO:K00162] [EC:1.2.4.1]
AXW83_07555  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
AXW83_04655  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bop00010  Glycolysis / Gluconeogenesis
bop00053  Ascorbate and aldarate metabolism
bop00061  Fatty acid biosynthesis
bop00071  Fatty acid degradation
bop00190  Oxidative phosphorylation
bop00220  Arginine biosynthesis
bop00250  Alanine, aspartate and glutamate metabolism
bop00280  Valine, leucine and isoleucine degradation
bop00350  Tyrosine metabolism
bop00470  D-Amino acid metabolism
bop00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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