KEGG   PATHWAY: bpla00020
Entry
bpla00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Burkholderia plantarii ATCC 43733
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bpla00020  Citrate cycle (TCA cycle)
bpla00020

Module
bpla_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bpla00020]
bpla_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bpla00020]
bpla_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bpla00020]
bpla_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bpla00020]
bpla_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bpla00020]
Other DBs
GO: 0006099
Organism
Burkholderia plantarii ATCC 43733 [GN:bpla]
Gene
bpln_1g29460  citrate synthase [KO:K01647] [EC:2.3.3.1]
bpln_1g11210  citrate synthase [KO:K01647] [EC:2.3.3.1]
bpln_2g18920  type II citrate synthase [KO:K01647] [EC:2.3.3.1]
bpln_2g19030  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
bpln_2g24750  aconitate hydratase domain-containing protein [KO:K01681] [EC:4.2.1.3]
bpln_2g10230  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
bpln_1g29350  Isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
bpln_1g29360  Isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
bpln_1g15880  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
bpln_2g27820  2-oxoglutarate dehydrogenase E1 subunit [KO:K00164] [EC:1.2.4.2]
bpln_1g15890  2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
bpln_2g02850  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
bpln_1g15900  Dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
bpln_1g25660  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
bpln_1g30430  Succinyl-CoA synthase subunit alpha [KO:K01902] [EC:6.2.1.5]
bpln_1g30440  succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
bpln_2g17450  Coenzyme A transferase [KO:K18118] [EC:2.8.3.18]
bpln_2g18950  Succinate dehydrogenase, flavoproteinsubunit [KO:K00239] [EC:1.3.5.1]
bpln_2g18940  Succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
bpln_2g18970  Succinate dehydrogenase, cytochrome b subunit [KO:K00241]
bpln_2g18960  Succinate dehydrogenase, cytochrome b subunit [KO:K00242]
bpln_1g26480  putative fumarate hydratase [KO:K01676] [EC:4.2.1.2]
bpln_2g12100  tartrate/fumarate subfamily Fe-S type hydro-lyase subunit alpha [KO:K01677] [EC:4.2.1.2]
bpln_2g12110  fumarate hydratase class I beta subunit [KO:K01678] [EC:4.2.1.2]
bpln_1g09150  Fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
bpln_2g18990  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
bpln_1g11540  Phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
bpln_1g10480  2-oxoacid dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
bpln_1g25680  pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
bpln_2g09020  2-oxo-acid dehydrogenase E1 subunit, homodimeric type [KO:K00163] [EC:1.2.4.1]
bpln_1g21770  alpha/beta hydrolase fold:Biotin/lipoyl attachment [KO:K00627] [EC:2.3.1.12]
bpln_1g25670  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bpla00010  Glycolysis / Gluconeogenesis
bpla00053  Ascorbate and aldarate metabolism
bpla00061  Fatty acid biosynthesis
bpla00071  Fatty acid degradation
bpla00190  Oxidative phosphorylation
bpla00220  Arginine biosynthesis
bpla00250  Alanine, aspartate and glutamate metabolism
bpla00280  Valine, leucine and isoleucine degradation
bpla00350  Tyrosine metabolism
bpla00470  D-Amino acid metabolism
bpla00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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