KEGG   PATHWAY: bps00020
Entry
bps00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Burkholderia pseudomallei K96243
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bps00020  Citrate cycle (TCA cycle)
bps00020

Module
bps_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bps00020]
bps_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bps00020]
bps_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bps00020]
bps_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bps00020]
bps_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bps00020]
Other DBs
GO: 0006099
Organism
Burkholderia pseudomallei K96243 [GN:bps]
Gene
BPSS1715  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
BPSL0890  putative citrate synthase [KO:K01647] [EC:2.3.3.1]
BPSS1726  citB; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
BPSL0896  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BPSL1909  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
BPSL1908  sucB; dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
BPSL1907  odhL; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BPSS2270  lpdV; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BPSL2299  putative dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BPSL0780  sucD; succinyl-CoA ligase alpha-chain [KO:K01902] [EC:6.2.1.5]
BPSL0779  sucC; succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
BPSS0514  acetyl-CoA hydrolase/transferase [KO:K18118] [EC:2.8.3.18]
BPSS1718  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BPSS1717  sdhB; succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
BPSS2262  sdhB; succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
BPSS1720  putative succinate dehydrogenase cytochrome b-556 subunit [KO:K00241]
BPSS1719  putative succinate dehydrogenase [KO:K00242]
BPSS0372  putative fumarate hydratase [KO:K01676] [EC:4.2.1.2]
BPSL2469  fumC; fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
BPSS1722  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BPSL1324  pckG; phosphoenolpyruvate carboxykinase [GTP] [KO:K01596] [EC:4.1.1.32]
BPSL2301  pdhA; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
BPSS1711  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
BPSL2300  pdhB; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bps00010  Glycolysis / Gluconeogenesis
bps00053  Ascorbate and aldarate metabolism
bps00061  Fatty acid biosynthesis
bps00071  Fatty acid degradation
bps00190  Oxidative phosphorylation
bps00220  Arginine biosynthesis
bps00250  Alanine, aspartate and glutamate metabolism
bps00280  Valine, leucine and isoleucine degradation
bps00350  Tyrosine metabolism
bps00470  D-Amino acid metabolism
bps00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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