KEGG   PATHWAY: bpso00020
Entry
bpso00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Burkholderia pseudomallei A79A
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bpso00020  Citrate cycle (TCA cycle)
bpso00020

Module
bpso_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bpso00020]
bpso_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bpso00020]
bpso_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bpso00020]
bpso_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bpso00020]
bpso_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bpso00020]
Other DBs
GO: 0006099
Organism
Burkholderia pseudomallei A79A [GN:bpso]
Gene
X996_5830  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
X996_3312  citrate synthase family protein [KO:K01647] [EC:2.3.3.1]
X996_5819  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
X996_3303  icd; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
X996_2633  sucA; oxoglutarate dehydrogenase (succinyl-transferring), E1 component [KO:K00164] [EC:1.2.4.2]
X996_2632  sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
X996_2631  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
X996_5231  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
X996_1868  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
X996_3423  sucD; succinate-CoA ligase, alpha subunit [KO:K01902] [EC:6.2.1.5]
X996_3424  sucC; succinate-CoA ligase, beta subunit [KO:K01903] [EC:6.2.1.5]
X996_4588  succinate CoA transferase family protein [KO:K18118] [EC:2.8.3.18]
X996_5827  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
X996_5828  succinate dehydrogenase and fumarate reductase iron-sulfur family protein [KO:K00240] [EC:1.3.5.1]
X996_5240  succinate dehydrogenase and fumarate reductase iron-sulfur family protein [KO:K00240] [EC:1.3.5.1]
X996_5825  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
X996_5826  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
X996_4736  hydrolyase, tartrate alpha subunit/fumarate, Fe-S type domain protein [KO:K01676] [EC:4.2.1.2]
X996_1690  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
X996_5823  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
X996_2882  phosphoenolpyruvate carboxykinase family protein [KO:K01596] [EC:4.1.1.32]
X996_5834  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
X996_1866  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
X996_1867  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bpso00010  Glycolysis / Gluconeogenesis
bpso00053  Ascorbate and aldarate metabolism
bpso00061  Fatty acid biosynthesis
bpso00071  Fatty acid degradation
bpso00190  Oxidative phosphorylation
bpso00220  Arginine biosynthesis
bpso00250  Alanine, aspartate and glutamate metabolism
bpso00280  Valine, leucine and isoleucine degradation
bpso00350  Tyrosine metabolism
bpso00470  D-Amino acid metabolism
bpso00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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