KEGG   PATHWAY: bpso00630
Entry
bpso00630                   Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Burkholderia pseudomallei A79A
Class
Metabolism; Carbohydrate metabolism
Pathway map
bpso00630  Glyoxylate and dicarboxylate metabolism
bpso00630

Module
bpso_M00012  Glyoxylate cycle [PATH:bpso00630]
bpso_M00621  Glycine cleavage system [PATH:bpso00630]
Other DBs
GO: 0046487 0043648
Organism
Burkholderia pseudomallei A79A [GN:bpso]
Gene
X996_1983  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1]
X996_3798  AMP-binding enzyme family protein [KO:K01895] [EC:6.2.1.1]
X996_2822  AMP-binding enzyme family protein [KO:K01895] [EC:6.2.1.1]
X996_4733  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
X996_1979  aceB; malate synthase A [KO:K01638] [EC:2.3.3.9]
X996_5823  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
X996_5830  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
X996_3312  citrate synthase family protein [KO:K01647] [EC:2.3.3.1]
X996_5819  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
X996_615  acetyl-CoA C-acetyltransferase family protein [KO:K00626] [EC:2.3.1.9]
X996_307  acetyl-CoA C-acetyltransferase family protein [KO:K00626] [EC:2.3.1.9]
X996_2241  acetyl-CoA C-acetyltransferase family protein [KO:K00626] [EC:2.3.1.9]
X996_2247  acetyl-CoA C-acetyltransferase family protein [KO:K00626] [EC:2.3.1.9]
X996_2130  acetyl-CoA C-acetyltransferase family protein [KO:K00626] [EC:2.3.1.9]
X996_2242  phbB-1; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
X996_5617  phbB; acetoacetyl-CoA reductase family protein [KO:K00023] [EC:1.1.1.36]
X996_1315  FAD binding domain protein [KO:K00104] [EC:1.1.99.14]
X996_1314  FAD binding domain protein [KO:K11472] [EC:1.1.99.14]
X996_1313  4Fe-4S binding domain protein [KO:K11473] [EC:1.1.99.14]
X996_605  catalase family protein [KO:K03781] [EC:1.11.1.6]
X996_4232  catalase family protein [KO:K03781] [EC:1.11.1.6]
X996_5290  catalase family protein [KO:K03781] [EC:1.11.1.6]
X996_370  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein [KO:K12972] [EC:1.1.1.79 1.1.1.81]
X996_2285  ghrB; glyoxylate/hydroxypyruvate reductase B [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
X996_1702  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
X996_1079  gph; phosphoglycolate phosphatase, bacterial [KO:K01091] [EC:3.1.3.18]
X996_1711  HAD hydrolase, IA, variant 1 family protein [KO:K01091] [EC:3.1.3.18]
X996_4631  glutamine synthetase, catalytic domain protein [KO:K01915] [EC:6.3.1.2]
X996_1829  glutamine synthetase, catalytic domain protein [KO:K01915] [EC:6.3.1.2]
X996_1848  glnA; glutamine synthetase, type I [KO:K01915] [EC:6.3.1.2]
X996_1401  beta-eliminating lyase family protein [KO:K00600] [EC:2.1.2.1]
X996_3726  glyA2; serine hydroxymethyltransferase 2 [KO:K00600] [EC:2.1.2.1]
X996_748  gcvP; glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
X996_750  gcvT; glycine cleavage system T protein [KO:K00605] [EC:2.1.2.10]
X996_2631  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
X996_5231  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
X996_1868  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
X996_749  gcvH; glycine cleavage system H protein [KO:K02437]
X996_2158  gcl; glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
X996_2157  hyi; hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
X996_2155  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
X996_2103  glycerate kinase family protein [KO:K00865] [EC:2.7.1.165]
X996_5006  glycerate kinase family protein [KO:K00865] [EC:2.7.1.165]
X996_5131  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
X996_1224  eda; 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase family protein [KO:K01625] [EC:4.1.2.14 4.1.3.42]
X996_4203  oxdD; oxalate decarboxylase oxdD [KO:K01569] [EC:4.1.1.2]
X996_1625  NADH-dependent formate dehydrogenase delta subunit FdsD family protein [KO:K00126] [EC:1.17.1.9]
X996_1626  formate dehydrogenase, alpha subunit [KO:K00123] [EC:1.17.1.9]
X996_5884  Tat (twin-arginine translocation) pathway signal sequence domain protein [KO:K00123] [EC:1.17.1.9]
X996_5885  formate dehydrogenase, alpha subunit [KO:K00123] [EC:1.17.1.9]
X996_5886  fdxH; formate dehydrogenase, beta subunit [KO:K00124]
X996_1627  NADH-ubiquinone oxidoreductase-F iron-sulfur binding region family protein [KO:K00124]
X996_5887  formate dehydrogenase, gamma subunit [KO:K00127]
X996_1628  thioredoxin-like [2Fe-2S] ferredoxin family protein [KO:K00127]
X996_2780  alpha/beta hydrolase fold family protein [KO:K01432] [EC:3.5.1.9]
X996_3354  kynB; arylformamidase [KO:K07130] [EC:3.5.1.9]
X996_130  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
X996_3737  formyl transferase family protein [KO:K01433] [EC:3.5.1.10]
X996_1826  hutG; N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
bpso00010  Glycolysis / Gluconeogenesis
bpso00020  Citrate cycle (TCA cycle)
bpso00030  Pentose phosphate pathway
bpso00053  Ascorbate and aldarate metabolism
bpso00071  Fatty acid degradation
bpso00230  Purine metabolism
bpso00250  Alanine, aspartate and glutamate metabolism
bpso00260  Glycine, serine and threonine metabolism
bpso00620  Pyruvate metabolism
bpso00710  Carbon fixation by Calvin cycle
bpso00750  Vitamin B6 metabolism
bpso00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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