KEGG   PATHWAY: bpyr00020
Entry
bpyr00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Burkholderia pyrrocinia
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bpyr00020  Citrate cycle (TCA cycle)
bpyr00020

Module
bpyr_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bpyr00020]
bpyr_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bpyr00020]
bpyr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bpyr00020]
bpyr_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bpyr00020]
bpyr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bpyr00020]
Other DBs
GO: 0006099
Organism
Burkholderia pyrrocinia [GN:bpyr]
Gene
ABD05_16940  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
ABD05_02720  citrate synthase [KO:K01647] [EC:2.3.3.1]
ABD05_16995  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
ABD05_26465  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
ABD05_02665  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
ABD05_02670  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
ABD05_13335  sucA; 2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
ABD05_13340  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
ABD05_13345  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
ABD05_00590  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
ABD05_11955  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
ABD05_03270  succinate--CoA ligase [KO:K01902] [EC:6.2.1.5]
ABD05_03275  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
ABD05_29890  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
ABD05_16955  fumarate reductase [KO:K00239] [EC:1.3.5.1]
ABD05_16950  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
ABD05_16965  succinate dehydrogenase [KO:K00241]
ABD05_16960  succinate dehydrogenase [KO:K00242]
ABD05_00980  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
ABD05_11060  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
ABD05_16975  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
ABD05_20360  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
ABD05_28015  phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
ABD05_00600  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
ABD05_19910  pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
ABD05_00595  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bpyr00010  Glycolysis / Gluconeogenesis
bpyr00053  Ascorbate and aldarate metabolism
bpyr00061  Fatty acid biosynthesis
bpyr00071  Fatty acid degradation
bpyr00190  Oxidative phosphorylation
bpyr00220  Arginine biosynthesis
bpyr00250  Alanine, aspartate and glutamate metabolism
bpyr00280  Valine, leucine and isoleucine degradation
bpyr00350  Tyrosine metabolism
bpyr00470  D-Amino acid metabolism
bpyr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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