KEGG   PATHWAY: braz00020
Entry
braz00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Bradyrhizobium sp. C-145
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
braz00020  Citrate cycle (TCA cycle)
braz00020

Module
braz_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:braz00020]
braz_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:braz00020]
braz_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:braz00020]
braz_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:braz00020]
braz_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:braz00020]
Other DBs
GO: 0006099
Organism
Bradyrhizobium sp. C-145 [GN:braz]
Gene
LRP30_21840  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
LRP30_43035  citrate synthase family protein [KO:K01647] [EC:2.3.3.1]
LRP30_43040  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
LRP30_00865  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
LRP30_26470  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
LRP30_00935  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
LRP30_00940  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
LRP30_00950  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LRP30_15335  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LRP30_15820  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LRP30_21475  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
LRP30_35835  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
LRP30_35840  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
LRP30_00930  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
LRP30_00920  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
LRP30_00610  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
LRP30_00605  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
LRP30_00620  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
LRP30_00615  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
LRP30_26705  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
LRP30_34785  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
LRP30_00915  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
LRP30_42340  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
LRP30_11990  transketolase [KO:K00163] [EC:1.2.4.1]
LRP30_15810  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
LRP30_21505  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
LRP30_21500  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
LRP30_15815  dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
LRP30_21485  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
braz00010  Glycolysis / Gluconeogenesis
braz00053  Ascorbate and aldarate metabolism
braz00061  Fatty acid biosynthesis
braz00071  Fatty acid degradation
braz00190  Oxidative phosphorylation
braz00220  Arginine biosynthesis
braz00250  Alanine, aspartate and glutamate metabolism
braz00280  Valine, leucine and isoleucine degradation
braz00350  Tyrosine metabolism
braz00470  D-Amino acid metabolism
braz00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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