KEGG   PATHWAY: brc00020
Entry
brc00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Bradyrhizobium sp. CCGE-LA001
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
brc00020  Citrate cycle (TCA cycle)
brc00020

Module
brc_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:brc00020]
brc_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:brc00020]
brc_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:brc00020]
brc_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:brc00020]
brc_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:brc00020]
Other DBs
GO: 0006099
Organism
Bradyrhizobium sp. CCGE-LA001 [GN:brc]
Gene
BCCGELA001_02935  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
BCCGELA001_02940  citrate synthase [KO:K01647] [EC:2.3.3.1]
BCCGELA001_20495  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
BCCGELA001_01870  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
BCCGELA001_24495  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BCCGELA001_01950  sucA; 2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
BCCGELA001_01955  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
BCCGELA001_01970  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BCCGELA001_20285  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BCCGELA001_09360  ferredoxin oxidoreductase [KO:K00174] [EC:1.2.7.3 1.2.7.11]
BCCGELA001_09355  2-oxoglutarate ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
BCCGELA001_01945  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
BCCGELA001_01935  sucC; succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
BCCGELA001_01625  fumarate reductase [KO:K00239] [EC:1.3.5.1]
BCCGELA001_01620  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
BCCGELA001_05705  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
BCCGELA001_01635  succinate dehydrogenase [KO:K00241]
BCCGELA001_01630  succinate dehydrogenase [KO:K00242]
BCCGELA001_24695  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
BCCGELA001_10345  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
BCCGELA001_08480  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
BCCGELA001_01930  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BCCGELA001_08490  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
BCCGELA001_03620  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
BCCGELA001_12650  transketolase [KO:K00163] [EC:1.2.4.1]
BCCGELA001_20315  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
BCCGELA001_20310  pyruvate dehydrogenase [KO:K00162] [EC:1.2.4.1]
BCCGELA001_20295  branched-chain alpha-keto acid dehydrogenase subunit E2 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
brc00010  Glycolysis / Gluconeogenesis
brc00053  Ascorbate and aldarate metabolism
brc00061  Fatty acid biosynthesis
brc00071  Fatty acid degradation
brc00190  Oxidative phosphorylation
brc00220  Arginine biosynthesis
brc00250  Alanine, aspartate and glutamate metabolism
brc00280  Valine, leucine and isoleucine degradation
brc00350  Tyrosine metabolism
brc00470  D-Amino acid metabolism
brc00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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