KEGG   PATHWAY: btax03008
Entry
btax03008                   Pathway                                
Name
Ribosome biogenesis in eukaryotes - Budorcas taxicolor (takin)
Description
Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
Class
Genetic Information Processing; Translation
Pathway map
btax03008  Ribosome biogenesis in eukaryotes
btax03008

Organism
Budorcas taxicolor (takin) [GN:btax]
Gene
128056158  CSNK2B; casein kinase II subunit beta [KO:K03115]
128063252  CSNK2A2; casein kinase II subunit alpha' isoform X1 [KO:K03097] [EC:2.7.11.1]
128058293  CSNK2A1; casein kinase II subunit alpha [KO:K03097] [EC:2.7.11.1]
128052241  NOL6; nucleolar protein 6 [KO:K14544]
128047691  RRP7A; ribosomal RNA-processing protein 7 homolog A [KO:K14545]
128055829  WDR43; WD repeat-containing protein 43 [KO:K14546]
128063334  UTP4; U3 small nucleolar RNA-associated protein 4 homolog [KO:K14548]
128071119  U3 small nucleolar RNA-associated protein 4 homolog [KO:K14548]
128066151  UTP15; U3 small nucleolar RNA-associated protein 15 homolog [KO:K14549]
128047749  HEATR1; HEAT repeat-containing protein 1 [KO:K14550]
128043184  WDR75; WD repeat-containing protein 75 [KO:K14552]
128065102  UTP18; U3 small nucleolar RNA-associated protein 18 homolog [KO:K14553]
128051114  WDR36; WD repeat-containing protein 36 [KO:K14554]
128069101  TBL3; transducin beta-like protein 3 isoform X1 [KO:K14555]
128044460  WDR3; WD repeat-containing protein 3 isoform X1 [KO:K14556]
128064537  UTP6; U3 small nucleolar RNA-associated protein 6 homolog [KO:K14557]
128046925  PWP2; periodic tryptophan protein 2 homolog [KO:K14558]
128066785  U3 small nucleolar ribonucleoprotein protein MPP10-like [KO:K14559]
128066786  U3 small nucleolar ribonucleoprotein protein MPP10-like [KO:K14559]
128066703  IMP3; U3 small nucleolar ribonucleoprotein protein IMP3 [KO:K14560]
128067445  IMP4; U3 small nucleolar ribonucleoprotein protein IMP4 [KO:K14561]
128050394  TCOF1; treacle protein [KO:K14562]
128071417  treacle protein-like [KO:K14562]
128050817  FBLL1; rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1 [KO:K14563] [EC:2.1.1.-]
128062795  FBL; rRNA 2'-O-methyltransferase fibrillarin [KO:K14563] [EC:2.1.1.-]
128058325  NOP56; nucleolar protein 56 [KO:K14564]
128071354  NOP58; nucleolar protein 58 isoform X1 [KO:K14565]
128047754  SNU13; NHP2-like protein 1 [KO:K12845]
128070363  DKC1; H/ACA ribonucleoprotein complex subunit DKC1 [KO:K11131] [EC:5.4.99.-]
128044776  LOW QUALITY PROTEIN: H/ACA ribonucleoprotein complex subunit 2-like [KO:K11129]
128051245  NHP2; H/ACA ribonucleoprotein complex subunit 2 [KO:K11129]
128059635  H/ACA ribonucleoprotein complex subunit 1-like [KO:K11128]
128049802  GAR1; H/ACA ribonucleoprotein complex subunit 1 [KO:K11128]
128054459  FCF1; rRNA-processing protein FCF1 homolog [KO:K14566]
128069784  UTP14A; U3 small nucleolar RNA-associated protein 14 homolog A [KO:K14567]
128053501  LOW QUALITY PROTEIN: U3 small nucleolar RNA-associated protein 14 homolog A-like [KO:K14567]
128066836  U3 small nucleolar RNA-associated protein 14 homolog A-like [KO:K14567]
128065980  DROSHA; ribonuclease 3 [KO:K03685] [EC:3.1.26.3]
128047683  EMG1; ribosomal RNA small subunit methyltransferase NEP1 isoform X1 [KO:K14568] [EC:2.1.1.260]
128047874  BMS1; ribosome biogenesis protein BMS1 homolog [KO:K14569]
128060128  NAT10; RNA cytidine acetyltransferase [KO:K14521] [EC:2.3.1.-]
128052333  RCL1; RNA 3'-terminal phosphate cyclase-like protein isoform X1 [KO:K11108]
128059536  POP1; ribonucleases P/MRP protein subunit POP1 [KO:K01164] [EC:3.1.26.5]
128066035  LOW QUALITY PROTEIN: ribonucleases P/MRP protein subunit POP1-like [KO:K01164] [EC:3.1.26.5]
128058554  RPP38; ribonuclease P protein subunit p38 [KO:K14523] [EC:3.1.26.5]
128063555  POP4; ribonuclease P protein subunit p29 [KO:K03538] [EC:3.1.26.5]
128062370  POP5; ribonuclease P/MRP protein subunit POP5 [KO:K03537] [EC:3.1.26.5]
128052423  RPP25L; ribonuclease P protein subunit p25-like protein [KO:K14525] [EC:3.1.26.5]
128067035  RPP25; ribonuclease P protein subunit p25 [KO:K14525] [EC:3.1.26.5]
128071497  POP7; ribonuclease P protein subunit p20 isoform X1 [KO:K14527] [EC:3.1.26.5]
128067789  RPP30; ribonuclease P protein subunit p30 [KO:K03539] [EC:3.1.26.5]
128056223  RPP40; ribonuclease P protein subunit p40 isoform X1 [KO:K14530] [EC:3.1.26.5]
128043237  REXO5; RNA exonuclease 5 [KO:K14570] [EC:3.1.-.-]
128050401  REXO1; RNA exonuclease 1 homolog isoform X1 [KO:K14570] [EC:3.1.-.-]
128060545  REXO2; oligoribonuclease, mitochondrial [KO:K13288] [EC:3.1.-.-]
128057788  XRN1; 5'-3' exoribonuclease 1 [KO:K12618] [EC:3.1.13.-]
128058161  XRN2; 5'-3' exoribonuclease 2 isoform X1 [KO:K12619] [EC:3.1.13.-]
128058234  GTPBP4; GTP-binding protein 4 [KO:K06943]
128044638  GNL2; nucleolar GTP-binding protein 2 isoform X1 [KO:K14537]
128069806  GNL3L; guanine nucleotide-binding protein-like 3-like protein [KO:K14538]
128046267  GNL3; guanine nucleotide-binding protein-like 3 [KO:K14538]
128061240  NVL; nuclear valosin-containing protein-like isoform X1 [KO:K14571]
128053090  MDN1; midasin [KO:K14572]
128046611  RBM28; RNA-binding protein 28 [KO:K14573]
128063341  NOB1; RNA-binding protein NOB1 [KO:K11883]
128069900  GTP-binding nuclear protein Ran-like [KO:K07936]
128044472  GTP-binding nuclear protein Ran-like [KO:K07936]
128051213  GTP-binding nuclear protein Ran-like [KO:K07936]
128046602  GTP-binding nuclear protein Ran-like [KO:K07936]
128053213  GTP-binding nuclear protein Ran [KO:K07936]
128054180  GTP-binding nuclear protein Ran-like [KO:K07936]
128062157  RAN; GTP-binding nuclear protein Ran [KO:K07936]
128068590  GTP-binding nuclear protein Ran [KO:K07936]
128055490  XPO1; exportin-1 [KO:K14290]
128047127  NMD3; 60S ribosomal export protein NMD3 [KO:K07562]
128070114  nuclear RNA export factor 2-like [KO:K14284]
128070145  LOW QUALITY PROTEIN: nuclear RNA export factor 3-like [KO:K14284]
128070146  LOW QUALITY PROTEIN: nuclear RNA export factor 3-like [KO:K14284]
128070461  NXF3; LOW QUALITY PROTEIN: nuclear RNA export factor 3 [KO:K14284]
128069052  NXF1; nuclear RNA export factor 1 [KO:K14284]
128070408  NXT2; NTF2-related export protein 2 [KO:K14285]
128058587  NXT1; NTF2-related export protein 1 [KO:K14285]
128058471  EIF6; eukaryotic translation initiation factor 6 [KO:K03264]
128071307  ribosome maturation protein SBDS [KO:K14574]
128061777  SBDS; ribosome maturation protein SBDS [KO:K14574]
128066384  EFL1; elongation factor-like GTPase 1 [KO:K14536] [EC:3.6.5.-]
128047616  LSG1; large subunit GTPase 1 homolog [KO:K14539] [EC:3.6.1.-]
128062310  SPATA5; ribosome biogenesis protein SPATA5 [KO:K14575]
128056269  RIOK1; serine/threonine-protein kinase RIO1 [KO:K07178] [EC:2.7.11.1]
128051173  RIOK2; serine/threonine-protein kinase RIO2 isoform X1 [KO:K07179] [EC:2.7.11.1]
128049182  18S ribosomal RNA [KO:K01979]
128071365  18S ribosomal RNA [KO:K01979]
128049048  5.8S ribosomal RNA [KO:K01986]
128049192  28S ribosomal RNA [KO:K01982]
128049191  28S ribosomal RNA [KO:K01982]
128051846  small nucleolar RNA U3 [KO:K14483]
128065786  small nucleolar RNA U3 [KO:K14483]
128065787  small nucleolar RNA U3 [KO:K14483]
Reference
  Authors
Freed EF, Bleichert F, Dutca LM, Baserga SJ
  Title
When ribosomes go bad: diseases of ribosome biogenesis.
  Journal
Mol Biosyst 6:481-93 (2010)
DOI:10.1039/b919670f
Reference
  Authors
Perez-Fernandez J, Roman A, De Las Rivas J, Bustelo XR, Dosil M
  Title
The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
  Journal
Mol Cell Biol 27:5414-29 (2007)
DOI:10.1128/MCB.00380-07
Reference
  Authors
Strunk BS, Karbstein K
  Title
Powering through ribosome assembly.
  Journal
RNA 15:2083-104 (2009)
DOI:10.1261/rna.1792109
Reference
  Authors
Granneman S, Baserga SJ
  Title
Ribosome biogenesis: of knobs and RNA processing.
  Journal
Exp Cell Res 296:43-50 (2004)
DOI:10.1016/j.yexcr.2004.03.016
Reference
  Authors
Kressler D, Hurt E, Bassler J
  Title
Driving ribosome assembly.
  Journal
Biochim Biophys Acta 1803:673-83 (2010)
DOI:10.1016/j.bbamcr.2009.10.009
Related
pathway
btax03010  Ribosome
KO pathway
ko03008   
LinkDB

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