KEGG   PATHWAY: btre00020
Entry
btre00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Bibersteinia trehalosi USDA-ARS-USMARC-188
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
btre00020  Citrate cycle (TCA cycle)
btre00020

Module
btre_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:btre00020]
btre_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:btre00020]
btre_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:btre00020]
btre_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:btre00020]
btre_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:btre00020]
Other DBs
GO: 0006099
Organism
Bibersteinia trehalosi USDA-ARS-USMARC-188 [GN:btre]
Gene
F542_9210  Citrate synthase I [KO:K01647] [EC:2.3.3.1]
F542_9200  Aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
F542_9190  Isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
F542_8820  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
F542_8810  Dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
F542_10700  Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
F542_15960  Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
F542_15970  Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
F542_18510  reductase [KO:K00244] [EC:1.3.5.1]
F542_18520  reductase [KO:K00245] [EC:1.3.5.1]
F542_18530  reductase [KO:K00246]
F542_18540  reductase [KO:K00247]
F542_980  Fumarate hydratase [KO:K01679] [EC:4.2.1.2]
F542_15340  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
F542_10650  Phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
F542_10680  Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
F542_10690  Dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
btre00010  Glycolysis / Gluconeogenesis
btre00053  Ascorbate and aldarate metabolism
btre00061  Fatty acid biosynthesis
btre00071  Fatty acid degradation
btre00190  Oxidative phosphorylation
btre00220  Arginine biosynthesis
btre00250  Alanine, aspartate and glutamate metabolism
btre00280  Valine, leucine and isoleucine degradation
btre00350  Tyrosine metabolism
btre00470  D-Amino acid metabolism
btre00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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