KEGG   PATHWAY: bve00020
Entry
bve00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Burkholderia vietnamiensis LMG 10929
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bve00020  Citrate cycle (TCA cycle)
bve00020

Module
bve_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bve00020]
bve_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bve00020]
bve_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bve00020]
bve_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bve00020]
bve_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bve00020]
Other DBs
GO: 0006099
Organism
Burkholderia vietnamiensis LMG 10929 [GN:bve]
Gene
AK36_1363  merR regulatory family protein [KO:K01647] [EC:2.3.3.1]
AK36_4394  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
AK36_4405  acnA; aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
AK36_5163  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
AK36_1372  icd; isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
AK36_1373  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
AK36_2378  sucA; oxoglutarate dehydrogenase (succinyl-transferring), E1 component [KO:K00164] [EC:1.2.4.2]
AK36_2377  sucB; dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
AK36_2376  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
AK36_1753  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
AK36_1262  sucD; succinate-CoA ligase, alpha subunit [KO:K01902] [EC:6.2.1.5]
AK36_1261  sucC; succinate-CoA ligase, beta subunit [KO:K01903] [EC:6.2.1.5]
AK36_4227  succinate CoA transferase family protein [KO:K18118] [EC:2.8.3.18]
AK36_4397  sdhA; succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
AK36_4396  succinate dehydrogenase and fumarate reductase iron-sulfur family protein [KO:K00240] [EC:1.3.5.1]
AK36_1418  succinate dehydrogenase and fumarate reductase iron-sulfur family protein [KO:K00240] [EC:1.3.5.1]
AK36_2447  succinate dehydrogenase and fumarate reductase iron-sulfur family protein [KO:K00240] [EC:1.3.5.1]
AK36_5304  succinate dehydrogenase and fumarate reductase iron-sulfur family protein [KO:K00240] [EC:1.3.5.1]
AK36_4399  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
AK36_4398  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
AK36_1692  hydrolyase, tartrate alpha subunit/fumarate, Fe-S type domain protein [KO:K01676] [EC:4.2.1.2]
AK36_2847  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
AK36_4401  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AK36_4942  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AK36_3875  phosphoenolpyruvate carboxykinase family protein [KO:K01596] [EC:4.1.1.32]
AK36_1751  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
AK36_2080  PGAP1-like family protein [KO:K00627] [EC:2.3.1.12]
AK36_1752  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bve00010  Glycolysis / Gluconeogenesis
bve00053  Ascorbate and aldarate metabolism
bve00061  Fatty acid biosynthesis
bve00071  Fatty acid degradation
bve00190  Oxidative phosphorylation
bve00220  Arginine biosynthesis
bve00250  Alanine, aspartate and glutamate metabolism
bve00280  Valine, leucine and isoleucine degradation
bve00350  Tyrosine metabolism
bve00470  D-Amino acid metabolism
bve00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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