KEGG   PATHWAY: bve00630
Entry
bve00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Burkholderia vietnamiensis LMG 10929
Class
Metabolism; Carbohydrate metabolism
Pathway map
bve00630  Glyoxylate and dicarboxylate metabolism
bve00630

Module
bve_M00012  Glyoxylate cycle [PATH:bve00630]
bve_M00621  Glycine cleavage system [PATH:bve00630]
Other DBs
GO: 0046487 0043648
Organism
Burkholderia vietnamiensis LMG 10929 [GN:bve]
Gene
AK36_1851  aceA; isocitrate lyase [KO:K01637] [EC:4.1.3.1 4.1.3.30]
AK36_3874  isocitrate lyase [KO:K01637] [EC:4.1.3.1 4.1.3.30]
AK36_1695  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
AK36_3426  AMP-binding enzyme family protein [KO:K01895] [EC:6.2.1.1]
AK36_5004  AMP-binding enzyme family protein [KO:K01895] [EC:6.2.1.1]
AK36_6002  acs; acetate--CoA ligase [KO:K01895] [EC:6.2.1.1]
AK36_4892  glcB; malate synthase G [KO:K01638] [EC:2.3.3.9]
AK36_1847  aceB; malate synthase A [KO:K01638] [EC:2.3.3.9]
AK36_4401  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AK36_4942  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AK36_1363  merR regulatory family protein [KO:K01647] [EC:2.3.3.1]
AK36_4394  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
AK36_3085  2-methylcitrate synthase/citrate synthase II family protein [KO:K01659] [EC:2.3.3.5]
AK36_4405  acnA; aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
AK36_5163  acnB; aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
AK36_1981  acetyl-CoA C-acyltransferase family protein [KO:K00626] [EC:2.3.1.9]
AK36_4684  thlA; acetyl-CoA acetyltransferase [KO:K00626] [EC:2.3.1.9]
AK36_2127  acetyl-CoA C-acyltransferase family protein [KO:K00626] [EC:2.3.1.9]
AK36_1125  acetyl-CoA C-acyltransferase family protein [KO:K00626] [EC:2.3.1.9]
AK36_5006  acetyl-CoA C-acyltransferase family protein [KO:K00626] [EC:2.3.1.9]
AK36_5136  acetyl-CoA C-acyltransferase family protein [KO:K00626] [EC:2.3.1.9]
AK36_2128  phbB-1; acetoacetyl-CoA reductase [KO:K00023] [EC:1.1.1.36]
AK36_1126  phbB; acetoacetyl-CoA reductase family protein [KO:K00023] [EC:1.1.1.36]
AK36_5757  phbB; acetoacetyl-CoA reductase family protein [KO:K00023] [EC:1.1.1.36]
AK36_5946  maoC like domain protein [KO:K17865] [EC:4.2.1.55]
AK36_5943  ccrA; crotonyl-CoA reductase [KO:K14446] [EC:1.3.1.85]
AK36_5530  hypothetical protein [KO:K01847] [EC:5.4.99.2]
AK36_109  FAD binding domain protein [KO:K00104] [EC:1.1.99.14]
AK36_110  FAD binding domain protein [KO:K11472] [EC:1.1.99.14]
AK36_111  4Fe-4S binding domain protein [KO:K11473] [EC:1.1.99.14]
AK36_5225  catalase family protein [KO:K03781] [EC:1.11.1.6]
AK36_740  catalase family protein [KO:K03781] [EC:1.11.1.6]
AK36_953  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein [KO:K12972] [EC:1.1.1.79 1.1.1.81]
AK36_5864  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein [KO:K12972] [EC:1.1.1.79 1.1.1.81]
AK36_2196  ghrB; glyoxylate/hydroxypyruvate reductase B [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
AK36_2832  D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein [KO:K00090] [EC:1.1.1.79 1.1.1.81 1.1.1.215]
AK36_3521  haloacid dehalogenase-like hydrolase family protein [KO:K01091] [EC:3.1.3.18]
AK36_301  gph; phosphoglycolate phosphatase, bacterial [KO:K01091] [EC:3.1.3.18]
AK36_2823  HAD hydrolase, IA, variant 1 family protein [KO:K01091] [EC:3.1.3.18]
AK36_921  glutamine synthetase, catalytic domain protein [KO:K01915] [EC:6.3.1.2]
AK36_3510  glutamine synthetase, catalytic domain protein [KO:K01915] [EC:6.3.1.2]
AK36_1728  glutamine synthetase, beta-Grasp domain protein [KO:K01915] [EC:6.3.1.2]
AK36_1739  glnA; glutamine synthetase, type I [KO:K01915] [EC:6.3.1.2]
AK36_66  beta-eliminating lyase family protein [KO:K00600] [EC:2.1.2.1]
AK36_4764  beta-eliminating lyase family protein [KO:K00600] [EC:2.1.2.1]
AK36_3338  glyA2; serine hydroxymethyltransferase 2 [KO:K00600] [EC:2.1.2.1]
AK36_619  gcvP; glycine dehydrogenase [KO:K00281] [EC:1.4.4.2]
AK36_617  gcvT; glycine cleavage system T protein [KO:K00605] [EC:2.1.2.10]
AK36_2376  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
AK36_1753  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
AK36_618  gcvH; glycine cleavage system H protein [KO:K02437]
AK36_2013  gcl; glyoxylate carboligase [KO:K01608] [EC:4.1.1.47]
AK36_2012  hyi; hydroxypyruvate isomerase [KO:K01816] [EC:5.3.1.22]
AK36_2011  2-hydroxy-3-oxopropionate reductase [KO:K00042] [EC:1.1.1.60]
AK36_1956  glycerate kinase family protein [KO:K00865] [EC:2.7.1.165]
AK36_4925  tartrate dehydrogenase [KO:K07246] [EC:1.1.1.93 4.1.1.73 1.1.1.83]
AK36_177  eda; 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase family protein [KO:K01625] [EC:4.1.2.14 4.1.3.42]
AK36_3784  bicupin, oxalate decarboxylase family protein [KO:K01569] [EC:4.1.1.2]
AK36_2907  NADH-dependent formate dehydrogenase delta subunit FdsD family protein [KO:K00126] [EC:1.17.1.9]
AK36_2906  formate dehydrogenase, alpha subunit [KO:K00123] [EC:1.17.1.9]
AK36_4350  fdnG; formate dehydrogenase-N alpha subunit [KO:K00123] [EC:1.17.1.9]
AK36_4351  molybdopterin oxidoreductase Fe4S4 domain protein [KO:K00123] [EC:1.17.1.9]
AK36_2905  NADH-ubiquinone oxidoreductase-F iron-sulfur binding region family protein [KO:K00124]
AK36_4349  fdxH; formate dehydrogenase, beta subunit [KO:K00124]
AK36_2904  thioredoxin-like [2Fe-2S] ferredoxin family protein [KO:K00127]
AK36_4348  formate dehydrogenase, gamma subunit [KO:K00127]
AK36_1323  kynB; arylformamidase [KO:K07130] [EC:3.5.1.9]
AK36_1118  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
AK36_3349  purU; formyltetrahydrofolate deformylase [KO:K01433] [EC:3.5.1.10]
AK36_1726  hutG; N-formylglutamate deformylase [KO:K01458] [EC:3.5.1.68]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
bve00010  Glycolysis / Gluconeogenesis
bve00020  Citrate cycle (TCA cycle)
bve00030  Pentose phosphate pathway
bve00053  Ascorbate and aldarate metabolism
bve00071  Fatty acid degradation
bve00230  Purine metabolism
bve00250  Alanine, aspartate and glutamate metabolism
bve00260  Glycine, serine and threonine metabolism
bve00620  Pyruvate metabolism
bve00710  Carbon fixation by Calvin cycle
bve00750  Vitamin B6 metabolism
bve00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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