KEGG   PATHWAY: bvo00020
Entry
bvo00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Bremerella volcania
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bvo00020  Citrate cycle (TCA cycle)
bvo00020

Module
bvo_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:bvo00020]
bvo_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bvo00020]
bvo_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bvo00020]
bvo_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bvo00020]
bvo_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bvo00020]
Other DBs
GO: 0006099
Organism
Bremerella volcania [GN:bvo]
Gene
Pan97_42980  gltA2; Citrate synthase 1 [KO:K01647] [EC:2.3.3.1]
Pan97_24010  acn; Aconitate hydratase precursor [KO:K01681] [EC:4.2.1.3]
Pan97_08720  icd_1; Isocitrate dehydrogenase [NADP] [KO:K00030] [EC:1.1.1.41]
Pan97_23290  icd_2; Isocitrate dehydrogenase [NADP] [KO:K00030] [EC:1.1.1.41]
Pan97_27730  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
Pan97_27720  sucB; Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
Pan97_30430  lpdA; Dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
Pan97_37240  korA; 2-oxoglutarate oxidoreductase subunit KorA [KO:K00174] [EC:1.2.7.3 1.2.7.11]
Pan97_37230  korB; 2-oxoglutarate oxidoreductase subunit KorB [KO:K00175] [EC:1.2.7.3 1.2.7.11]
Pan97_51530  sucD_2; Succinyl-CoA ligase [ADP-forming] subunit alpha [KO:K01902] [EC:6.2.1.5]
Pan97_51540  sucC; Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
Pan97_46000  frdA; Fumarate reductase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Pan97_45990  frdB; Fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
Pan97_46010  sdhC; Succinate dehydrogenase cytochrome b558 subunit [KO:K00241]
Pan97_45900  fumC; Fumarate hydratase class II [KO:K01679] [EC:4.2.1.2]
Pan97_14160  mdh_1; Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Pan97_33570  cfiB; 2-oxoglutarate carboxylase small subunit [KO:K01958] [EC:6.4.1.1]
Pan97_31190  pckA; Phosphoenolpyruvate carboxykinase [ATP] [KO:K01610] [EC:4.1.1.49]
Pan97_30420  aceE; Pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
Pan97_15990  acoA; Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha [KO:K00161] [EC:1.2.4.1]
Pan97_15980  pdhB; Pyruvate dehydrogenase E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
Pan97_15970  pdhC_1; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Pan97_30410  pdhC_2; Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bvo00010  Glycolysis / Gluconeogenesis
bvo00053  Ascorbate and aldarate metabolism
bvo00061  Fatty acid biosynthesis
bvo00071  Fatty acid degradation
bvo00190  Oxidative phosphorylation
bvo00220  Arginine biosynthesis
bvo00250  Alanine, aspartate and glutamate metabolism
bvo00280  Valine, leucine and isoleucine degradation
bvo00350  Tyrosine metabolism
bvo00470  D-Amino acid metabolism
bvo00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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