KEGG   PATHWAY: bxy00020
Entry
bxy00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Bacteroides xylanisolvens
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
bxy00020  Citrate cycle (TCA cycle)
bxy00020

Module
bxy_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:bxy00020]
bxy_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:bxy00020]
bxy_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:bxy00020]
bxy_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:bxy00020]
Other DBs
GO: 0006099
Organism
Bacteroides xylanisolvens [GN:bxy]
Gene
BXY_12330  Citrate synthase [KO:K01659] [EC:2.3.3.5]
BXY_12310  aconitase [KO:K27802] [EC:4.2.1.3 4.2.1.99]
BXY_12320  isocitrate dehydrogenase (NADP) [KO:K00031] [EC:1.1.1.42]
BXY_15210  Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [KO:K00658] [EC:2.3.1.61]
BXY_15190  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BXY_23280  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
BXY_15370  Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
BXY_19980  Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [KO:K00174] [EC:1.2.7.3 1.2.7.11]
BXY_15350  Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
BXY_19990  Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [KO:K00175] [EC:1.2.7.3 1.2.7.11]
BXY_15340  2-oxoglutarate ferredoxin oxidoreductase, gamma subunit [KO:K00177] [EC:1.2.7.3]
BXY_15380  Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [KO:K00176] [EC:1.2.7.3]
BXY_06130  succinyl-CoA synthetase (ADP-forming) alpha subunit [KO:K01902] [EC:6.2.1.5]
BXY_06120  succinyl-CoA synthetase (ADP-forming) beta subunit [KO:K01903] [EC:6.2.1.5]
BXY_21330  succinate dehydrogenase subunit A [KO:K00239] [EC:1.3.5.1]
BXY_21340  succinate dehydrogenase subunit B [KO:K00240] [EC:1.3.5.1]
BXY_21320  succinate dehydrogenase subunit C [KO:K00241]
BXY_10510  fumarase [KO:K01676] [EC:4.2.1.2]
BXY_30180  malate dehydrogenase (NAD) [KO:K00024] [EC:1.1.1.37]
BXY_17090  malate dehydrogenase (NAD) [KO:K00024] [EC:1.1.1.37]
BXY_47020  pyruvate carboxylase subunit B [KO:K01960] [EC:6.4.1.1]
BXY_21570  Pyruvate/oxaloacetate carboxyltransferase [KO:K01960] [EC:6.4.1.1]
BXY_19220  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
BXY_14220  pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
bxy00010  Glycolysis / Gluconeogenesis
bxy00053  Ascorbate and aldarate metabolism
bxy00061  Fatty acid biosynthesis
bxy00190  Oxidative phosphorylation
bxy00220  Arginine biosynthesis
bxy00250  Alanine, aspartate and glutamate metabolism
bxy00280  Valine, leucine and isoleucine degradation
bxy00350  Tyrosine metabolism
bxy00470  D-Amino acid metabolism
bxy00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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