KEGG   PATHWAY: cacn00020
Entry
cacn00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Cutibacterium acnes KCOM 1861 (= ChDC B594)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cacn00020  Citrate cycle (TCA cycle)
cacn00020

Module
cacn_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cacn00020]
cacn_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cacn00020]
cacn_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cacn00020]
cacn_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cacn00020]
Other DBs
GO: 0006099
Organism
Cutibacterium acnes KCOM 1861 (= ChDC B594) [GN:cacn]
Gene
RN83_07565  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
RN83_11675  hypothetical protein [KO:K01647] [EC:2.3.3.1]
RN83_05670  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
RN83_09015  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
RN83_06685  kgd; alpha-ketoglutarate decarboxylase [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
RN83_06520  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
RN83_09820  2-oxoglutarate ferredoxin oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
RN83_09825  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
RN83_09095  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
RN83_09100  succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
RN83_10565  acetyl-CoA hydrolase [KO:K18118] [EC:2.8.3.18]
RN83_05110  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
RN83_07645  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
RN83_05115  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
RN83_07640  succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
RN83_05105  succinate dehydrogenase [KO:K00241]
RN83_07650  succinate dehydrogenase [KO:K00241]
RN83_00085  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
RN83_09025  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
RN83_05305  alpha-ketoglutarate dehydrogenase [KO:K00163] [EC:1.2.4.1]
RN83_04020  dihydrolipoamide acyltransferase [KO:K00627] [EC:2.3.1.12]
RN83_01255  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cacn00010  Glycolysis / Gluconeogenesis
cacn00053  Ascorbate and aldarate metabolism
cacn00061  Fatty acid biosynthesis
cacn00190  Oxidative phosphorylation
cacn00220  Arginine biosynthesis
cacn00250  Alanine, aspartate and glutamate metabolism
cacn00280  Valine, leucine and isoleucine degradation
cacn00350  Tyrosine metabolism
cacn00470  D-Amino acid metabolism
cacn00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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