KEGG   PATHWAY: cars00020
Entry
cars00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Citrobacter arsenatis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cars00020  Citrate cycle (TCA cycle)
cars00020

Module
cars_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cars00020]
cars_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cars00020]
cars_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cars00020]
cars_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cars00020]
cars_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cars00020]
Other DBs
GO: 0006099
Organism
Citrobacter arsenatis [GN:cars]
Gene
E1B03_08685  citrate synthase [KO:K01647] [EC:2.3.3.1]
E1B03_09020  hydratase [KO:K01681] [EC:4.2.1.3]
E1B03_14300  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
E1B03_05145  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
E1B03_11370  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
E1B03_08710  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
E1B03_08715  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
E1B03_05125  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
E1B03_08725  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
E1B03_08720  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
E1B03_08700  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
E1B03_08705  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
E1B03_08690  sdhC; succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
E1B03_08695  sdhD; succinate dehydrogenase membrane anchor subunit [KO:K00242]
E1B03_03310  frdA; fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
E1B03_03305  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
E1B03_03300  frdC; fumarate reductase subunit FrdC [KO:K00246]
E1B03_03295  frdD; fumarate reductase subunit FrdD [KO:K00247]
E1B03_08790  class I fumarate hydratase [KO:K01676] [EC:4.2.1.2]
E1B03_12750  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
E1B03_03135  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
E1B03_12755  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
E1B03_12230  fumD; fumarate hydratase FumD [KO:K01675] [EC:4.2.1.2]
E1B03_23715  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
E1B03_18035  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
E1B03_24495  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
E1B03_05115  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
E1B03_05120  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
E1B03_13950  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cars00010  Glycolysis / Gluconeogenesis
cars00053  Ascorbate and aldarate metabolism
cars00061  Fatty acid biosynthesis
cars00071  Fatty acid degradation
cars00190  Oxidative phosphorylation
cars00220  Arginine biosynthesis
cars00250  Alanine, aspartate and glutamate metabolism
cars00280  Valine, leucine and isoleucine degradation
cars00350  Tyrosine metabolism
cars00470  D-Amino acid metabolism
cars00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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