KEGG   PATHWAY: cate00020
Entry
cate00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Saccharobesus litoralis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cate00020  Citrate cycle (TCA cycle)
cate00020

Module
cate_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cate00020]
cate_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cate00020]
cate_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cate00020]
cate_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cate00020]
Other DBs
GO: 0006099
Organism
Saccharobesus litoralis [GN:cate]
Gene
C2869_13680  citrate synthase [KO:K01647] [EC:2.3.3.1]
C2869_02265  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
C2869_20910  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
C2869_00925  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
C2869_01755  NAD-dependent isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
C2869_02240  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
C2869_02235  dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
C2869_20925  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
C2869_02225  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
C2869_02230  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
C2869_02250  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
C2869_02245  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
C2869_02260  succinate dehydrogenase cytochrome b556 large subunit [KO:K00241]
C2869_02255  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
C2869_15025  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
C2869_20860  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
C2869_20935  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
C2869_20930  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cate00010  Glycolysis / Gluconeogenesis
cate00053  Ascorbate and aldarate metabolism
cate00061  Fatty acid biosynthesis
cate00071  Fatty acid degradation
cate00190  Oxidative phosphorylation
cate00220  Arginine biosynthesis
cate00250  Alanine, aspartate and glutamate metabolism
cate00280  Valine, leucine and isoleucine degradation
cate00350  Tyrosine metabolism
cate00470  D-Amino acid metabolism
cate00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system