KEGG   PATHWAY: cbg00020
Entry
cbg00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Coxiella burnetii CbuG_Q212
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cbg00020  Citrate cycle (TCA cycle)
cbg00020

Module
cbg_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cbg00020]
cbg_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cbg00020]
cbg_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cbg00020]
cbg_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cbg00020]
cbg_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cbg00020]
Other DBs
GO: 0006099
Organism
Coxiella burnetii CbuG_Q212 [GN:cbg]
Gene
CbuG_0605  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
CbuG_0101  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
CbuG_0809  icd; isocitrate dehydrogenase (NADP) [KO:K00031] [EC:1.1.1.42]
CbuG_0614  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
CbuG_0615  sucB; dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex [KO:K00658] [EC:2.3.1.61]
CbuG_1549  lpdA; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
CbuG_0617  sucD; succinyl-CoA synthetase alpha chain [KO:K01902] [EC:6.2.1.5]
CbuG_0616  sucC; succinyl-CoA synthetase beta chain [KO:K01903] [EC:6.2.1.5]
CbuG_0612  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CbuG_0613  sdhB; succinate dehydrogenase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
CbuG_0610  sdhC; succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
CbuG_0611  sdhD; succinate dehydrogenase membrane anchor subunit [KO:K00242]
CbuG_0907  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
CbuG_0769  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CbuG_2094  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
CbuG_1551  aceE; pyruvate dehydrogenase E1 component [KO:K00163] [EC:1.2.4.1]
CbuG_1550  aceF; dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cbg00010  Glycolysis / Gluconeogenesis
cbg00053  Ascorbate and aldarate metabolism
cbg00061  Fatty acid biosynthesis
cbg00071  Fatty acid degradation
cbg00190  Oxidative phosphorylation
cbg00220  Arginine biosynthesis
cbg00250  Alanine, aspartate and glutamate metabolism
cbg00280  Valine, leucine and isoleucine degradation
cbg00350  Tyrosine metabolism
cbg00470  D-Amino acid metabolism
cbg00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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