KEGG   PATHWAY: cbr00020
Entry
cbr00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Caenorhabditis briggsae (nematode)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cbr00020  Citrate cycle (TCA cycle)
cbr00020

Module
cbr_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cbr00020]
cbr_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cbr00020]
cbr_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cbr00020]
cbr_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cbr00020]
cbr_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cbr00020]
Other DBs
GO: 0006099
Organism
Caenorhabditis briggsae (nematode) [GN:cbr]
Gene
CBG_09810  Cbr-cts-1; Protein CBR-CTS-1 [KO:K01647] [EC:2.3.3.1]
CBG_09435  Protein CBG09435 [KO:K01648] [EC:2.3.3.8]
CBG_24512  Protein CBG24512 [KO:K01648] [EC:2.3.3.8]
CBG_22943  Cbr-aco-2; Protein CBR-ACO-2 [KO:K01681] [EC:4.2.1.3]
CBG_17361  Cbr-aco-1; Protein CBR-ACO-1 [KO:K01681] [EC:4.2.1.3]
CBG_21657  Protein CBG21657 [KO:K00031] [EC:1.1.1.42]
CBG_17397  Protein CBG17397 [KO:K00031] [EC:1.1.1.42]
CBG_12504  Cbr-idha-1; Protein CBR-IDHA-1 [KO:K00030] [EC:1.1.1.41]
CBG_03937  Cbr-idhg-2; Protein CBR-IDHG-2 [KO:K00030] [EC:1.1.1.41]
CBG_18040  Cbr-idhg-1; Protein CBR-IDHG-1 [KO:K00030] [EC:1.1.1.41]
CBG_16309  Cbr-idhb-1; Protein CBR-IDHB-1 [KO:K00030] [EC:1.1.1.41]
CBG_01737  Cbr-ogdh-1; Protein CBR-OGDH-1 [KO:K00164] [EC:1.2.4.2]
CBG_19001  Cbr-dlst-1; Protein CBR-DLST-1 [KO:K00658] [EC:2.3.1.61]
CBG_21577  Cbr-dld-1; Protein CBR-DLD-1 [KO:K00382] [EC:1.8.1.4]
CBG_15175  Cbr-sucl-2; Protein CBR-SUCL-2 [KO:K01899] [EC:6.2.1.4 6.2.1.5]
CBG_07585  Cbr-sucl-1; Protein CBR-SUCL-1 [KO:K01899] [EC:6.2.1.4 6.2.1.5]
CBG_00458  Cbr-sucg-1; Protein CBR-SUCG-1 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
CBG_17559  Cbr-suca-1; Protein CBR-SUCA-1 [KO:K01900] [EC:6.2.1.4 6.2.1.5]
CBG_12805  Cbr-sdha-2; Protein CBR-SDHA-2 [KO:K00234] [EC:1.3.5.1]
CBG_22795  Cbr-sdha-1; Protein CBR-SDHA-1 [KO:K00234] [EC:1.3.5.1]
CBG_00872  Cbr-sdhb-1; Protein CBR-SDHB-1 [KO:K00235] [EC:1.3.5.1]
CBG_24607  Cbr-mev-1; Protein CBR-MEV-1 [KO:K00236]
CBG_02978  Cbr-sdhd-1; Protein CBR-SDHD-1 [KO:K00237]
CBG_09180  Cbr-fum-1; Protein CBR-FUM-1 [KO:K01679] [EC:4.2.1.2]
CBG_18957  Cbr-mdh-1; Protein CBR-MDH-1 [KO:K00025] [EC:1.1.1.37]
CBG_15213  Cbr-mdh-2; Protein CBR-MDH-2 [KO:K00026] [EC:1.1.1.37]
CBG_23262  Cbr-pyc-1; Protein CBR-PYC-1 [KO:K01958] [EC:6.4.1.1]
CBG_08279  Protein CBG08279 [KO:K01596] [EC:4.1.1.32]
CBG_00466  Protein CBG00466 [KO:K01596] [EC:4.1.1.32]
CBG_13339  Cbr-pdha-1; Protein CBR-PDHA-1 [KO:K00161] [EC:1.2.4.1]
CBG_21051  Cbr-pdhb-1; Protein CBR-PDHB-1 [KO:K00162] [EC:1.2.4.1]
CBG_00405  Protein CBG00405 [KO:K00627] [EC:2.3.1.12]
CBG_04612  Cbr-dlat-1; Protein CBR-DLAT-1 [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cbr00010  Glycolysis / Gluconeogenesis
cbr00053  Ascorbate and aldarate metabolism
cbr00061  Fatty acid biosynthesis
cbr00062  Fatty acid elongation
cbr00071  Fatty acid degradation
cbr00190  Oxidative phosphorylation
cbr00220  Arginine biosynthesis
cbr00250  Alanine, aspartate and glutamate metabolism
cbr00280  Valine, leucine and isoleucine degradation
cbr00350  Tyrosine metabolism
cbr00470  D-Amino acid metabolism
cbr00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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