KEGG   PATHWAY: ccp00020
Entry
ccp00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Chondrus crispus (carragheen)
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ccp00020  Citrate cycle (TCA cycle)
ccp00020

Module
ccp_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ccp00020]
ccp_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ccp00020]
Other DBs
GO: 0006099
Organism
Chondrus crispus (carragheen) [GN:ccp]
Gene
CHC_T00007817001  hypothetical protein [KO:K01647] [EC:2.3.3.1]
CHC_T00009045001  ATP-citrate lyase [KO:K01648] [EC:2.3.3.8]
CHC_T00009158001  ATP citrate lyase [KO:K01648] [EC:2.3.3.8]
CHC_T00008781001  Aconitate hydratase, mitochondrial [KO:K01681] [EC:4.2.1.3]
CHC_T00009580001  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
CHC_T00008852001  Isocitrate dehydrogenase, NAD-dependent [KO:K00030] [EC:1.1.1.41]
CHC_T00009162001  Isocitrate dehydrogenase, NAD-dependent [KO:K00030] [EC:1.1.1.41]
CHC_T00009293001  isocitrate dehydrogenase (NAD+) subunit 2, mitochondrial precursor [KO:K00030] [EC:1.1.1.41]
CHC_T00008312001  2-oxoglutarate dehydrogenase, E1 component [KO:K00164] [EC:1.2.4.2]
CHC_T00010023001  2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [KO:K00658] [EC:2.3.1.61]
CHC_T00010287001  lipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
CHC_T00008441001  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
CHC_T00009212001  succinyl-CoA synthetase alpha chain [KO:K01899] [EC:6.2.1.4 6.2.1.5]
CHC_T00008602001  succinate--CoA ligase (ADP-or GDP-forming), mitochondrial precursor [KO:K01900] [EC:6.2.1.4 6.2.1.5]
CHC_T00008943001  succinate dehydrogenase (Complex II) flavoprotein subunit precursor [KO:K00234] [EC:1.3.5.1]
CHC_T00007584001  hypothetical protein [KO:K00235] [EC:1.3.5.1]
ChcroMp09  sdh2; succinate:cytochrome c oxidoreductase subunit 2 [KO:K00235] [EC:1.3.5.1]
ChcroMp10  sdh3; succinate:cytochrome c oxidoreductase subunit 3 [KO:K00236]
CHC_T00008951001  fumarate hydratase precursor [KO:K01679] [EC:4.2.1.2]
CHC_T00008600001  Malate dehydrogenase [KO:K00025] [EC:1.1.1.37]
CHC_T00008733001  malate dehydrogenase, mitochondrial precursor [KO:K00024] [EC:1.1.1.37]
CHC_T00009350001  Malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CHC_T00008732001  pyruvate dehydrogenase E1 alpha subunit, mitochondrial precursor [KO:K00161] [EC:1.2.4.1]
CHC_725  pdhA; pyruvate dehydrogenase E1 component alpha subunit [KO:K00161] [EC:1.2.4.1]
CHC_T00008442001  hypothetical protein [KO:K00162] [EC:1.2.4.1]
CHC_T00007380001  hypothetical protein [KO:K00627] [EC:2.3.1.12]
CHC_T00007488001  hypothetical protein [KO:K00627] [EC:2.3.1.12]
CHC_T00004322001  hypothetical protein [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ccp00010  Glycolysis / Gluconeogenesis
ccp00053  Ascorbate and aldarate metabolism
ccp00061  Fatty acid biosynthesis
ccp00062  Fatty acid elongation
ccp00071  Fatty acid degradation
ccp00190  Oxidative phosphorylation
ccp00220  Arginine biosynthesis
ccp00250  Alanine, aspartate and glutamate metabolism
ccp00280  Valine, leucine and isoleucine degradation
ccp00350  Tyrosine metabolism
ccp00470  D-Amino acid metabolism
ccp00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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