KEGG   PATHWAY: cdp00020
Entry
cdp00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Corynebacterium diphtheriae 241
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cdp00020  Citrate cycle (TCA cycle)
cdp00020

Module
cdp_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cdp00020]
cdp_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cdp00020]
cdp_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cdp00020]
cdp_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cdp00020]
cdp_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cdp00020]
Other DBs
GO: 0006099
Organism
Corynebacterium diphtheriae 241 [GN:cdp]
Gene
CD241_0712  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
CD241_1214  acn; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
CD241_0570  icd; isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
CD241_0910  sucA; 2-oxoglutarate dehydrogenase, E1 subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
CD241_0307  lpd; dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
CD241_1814  cat1; succinyl-CoA:coenzyme A transferase [KO:K18118] [EC:2.8.3.18]
CD241_0310  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CD241_0311  sdhC; succinate dehydrogenase reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CD241_0309  sdhB; succinate dehydrogenase iron-sulfur protein [KO:K00241]
CD241_0844  fum; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
CD241_1719  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CD241_1437  mqo; malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
CD241_0586  pyc; pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
CD241_2066  pck; phosphoenolpyruvate carboxykinase [KO:K01596] [EC:4.1.1.32]
CD241_1620  aceE; pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
CD241_1574  sucB; dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cdp00010  Glycolysis / Gluconeogenesis
cdp00053  Ascorbate and aldarate metabolism
cdp00061  Fatty acid biosynthesis
cdp00071  Fatty acid degradation
cdp00190  Oxidative phosphorylation
cdp00220  Arginine biosynthesis
cdp00250  Alanine, aspartate and glutamate metabolism
cdp00280  Valine, leucine and isoleucine degradation
cdp00350  Tyrosine metabolism
cdp00470  D-Amino acid metabolism
cdp00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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