KEGG   PATHWAY: cdq00020
Entry
cdq00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Chelatococcus daeguensis
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cdq00020  Citrate cycle (TCA cycle)
cdq00020

Module
cdq_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cdq00020]
cdq_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cdq00020]
cdq_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cdq00020]
cdq_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cdq00020]
cdq_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cdq00020]
Other DBs
GO: 0006099
Organism
Chelatococcus daeguensis [GN:cdq]
Gene
BOQ54_09270  citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
BOQ54_18635  citrate synthase [KO:K01647] [EC:2.3.3.1]
BOQ54_18640  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
BOQ54_02290  aconitate hydratase 1 [KO:K27802] [EC:4.2.1.3 4.2.1.99]
BOQ54_12000  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
BOQ54_01945  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
BOQ54_01940  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
BOQ54_01935  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BOQ54_12935  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BOQ54_09400  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
BOQ54_01950  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
BOQ54_01955  succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
BOQ54_01995  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
BOQ54_01990  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
BOQ54_02005  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
BOQ54_02000  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
BOQ54_14375  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
BOQ54_12530  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
BOQ54_01960  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
BOQ54_07405  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
BOQ54_01045  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
BOQ54_04235  transketolase [KO:K00163] [EC:1.2.4.1]
BOQ54_09385  pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
BOQ54_09390  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
BOQ54_03605  hypothetical protein [KO:K00627] [EC:2.3.1.12]
BOQ54_17170  acetoin dehydrogenase dihydrolipoyllysine-residue acetyltransferase subunit [KO:K00627] [EC:2.3.1.12]
BOQ54_09395  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cdq00010  Glycolysis / Gluconeogenesis
cdq00053  Ascorbate and aldarate metabolism
cdq00061  Fatty acid biosynthesis
cdq00071  Fatty acid degradation
cdq00190  Oxidative phosphorylation
cdq00220  Arginine biosynthesis
cdq00250  Alanine, aspartate and glutamate metabolism
cdq00280  Valine, leucine and isoleucine degradation
cdq00350  Tyrosine metabolism
cdq00470  D-Amino acid metabolism
cdq00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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