KEGG   PATHWAY: ced00020
Entry
ced00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Dickeya fangzhongdai ND14b
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
ced00020  Citrate cycle (TCA cycle)
ced00020

Module
ced_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:ced00020]
ced_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:ced00020]
ced_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:ced00020]
ced_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:ced00020]
ced_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:ced00020]
Other DBs
GO: 0006099
Organism
Dickeya fangzhongdai ND14b [GN:ced]
Gene
LH89_05880  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
LH89_21800  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
LH89_19110  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
LH89_16225  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
LH89_00720  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
LH89_05855  2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
LH89_05850  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
LH89_16195  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
LH89_05840  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
LH89_05845  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
LH89_05865  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
LH89_05860  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
LH89_05875  succinate dehydrogenase [KO:K00241]
LH89_05870  sdhD; succinate dehydrogenase [KO:K00242]
LH89_14995  fumarate reductase [KO:K00244] [EC:1.3.5.1]
LH89_14990  fumarate reductase [KO:K00245] [EC:1.3.5.1]
LH89_14985  fumarate reductase [KO:K00246]
LH89_14980  fumarate reductase [KO:K00247]
LH89_07915  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
LH89_01560  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
LH89_09235  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
LH89_19490  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
LH89_14315  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
LH89_16185  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
LH89_16190  aceF; pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
LH89_03620  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
LH89_08605  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
LH89_15140  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
ced00010  Glycolysis / Gluconeogenesis
ced00053  Ascorbate and aldarate metabolism
ced00061  Fatty acid biosynthesis
ced00071  Fatty acid degradation
ced00190  Oxidative phosphorylation
ced00220  Arginine biosynthesis
ced00250  Alanine, aspartate and glutamate metabolism
ced00280  Valine, leucine and isoleucine degradation
ced00350  Tyrosine metabolism
ced00470  D-Amino acid metabolism
ced00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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