KEGG   PATHWAY: cem00020
Entry
cem00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Cedecea neteri M006
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cem00020  Citrate cycle (TCA cycle)
cem00020

Module
cem_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cem00020]
cem_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cem00020]
cem_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cem00020]
cem_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cem00020]
cem_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cem00020]
Other DBs
GO: 0006099
Organism
Cedecea neteri M006 [GN:cem]
Gene
LH23_11660  gltA; type II citrate synthase [KO:K01647] [EC:2.3.3.1]
LH23_18135  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
LH23_09080  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
LH23_14005  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
LH23_11685  2-oxoglutarate dehydrogenase [KO:K00164] [EC:1.2.4.2]
LH23_11690  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
LH23_09070  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
LH23_11700  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
LH23_11695  sucC; succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
LH23_11675  sdhA; succinate dehydrogenase [KO:K00239] [EC:1.3.5.1]
LH23_11680  sdhB; succinate dehydrogenase [KO:K00240] [EC:1.3.5.1]
LH23_11665  sdhC; succinate dehydrogenase [KO:K00241]
LH23_11670  sdhD; succinate dehydrogenase [KO:K00242]
LH23_07305  fumarate reductase [KO:K00244] [EC:1.3.5.1]
LH23_07300  fumarate reductase [KO:K00245] [EC:1.3.5.1]
LH23_07295  fumarate reductase [KO:K00246]
LH23_07290  fumarate reductase [KO:K00247]
LH23_15215  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
LH23_09815  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
LH23_15220  fumC; fumarate hydratase [KO:K01679] [EC:4.2.1.2]
LH23_14070  hypothetical protein [KO:K01675] [EC:4.2.1.2]
LH23_03080  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
LH23_18875  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
LH23_03820  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
LH23_09060  aceE; pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
LH23_09065  aceF; pyruvate dehydrogenase [KO:K00627] [EC:2.3.1.12]
LH23_16365  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cem00010  Glycolysis / Gluconeogenesis
cem00053  Ascorbate and aldarate metabolism
cem00061  Fatty acid biosynthesis
cem00071  Fatty acid degradation
cem00190  Oxidative phosphorylation
cem00220  Arginine biosynthesis
cem00250  Alanine, aspartate and glutamate metabolism
cem00280  Valine, leucine and isoleucine degradation
cem00350  Tyrosine metabolism
cem00470  D-Amino acid metabolism
cem00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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