KEGG   PATHWAY: cfh00020
Entry
cfh00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Caulobacter flavus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cfh00020  Citrate cycle (TCA cycle)
cfh00020

Module
cfh_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cfh00020]
cfh_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cfh00020]
cfh_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cfh00020]
cfh_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cfh00020]
Other DBs
GO: 0006099
Organism
Caulobacter flavus [GN:cfh]
Gene
C1707_18665  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
C1707_06665  citrate synthase/methylcitrate synthase [KO:K01647] [EC:2.3.3.1]
C1707_06670  citrate synthase [KO:K01647] [EC:2.3.3.1]
C1707_05385  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
C1707_11470  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
C1707_04110  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
C1707_04115  dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
C1707_18520  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
C1707_07525  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
C1707_04105  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
C1707_04100  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
C1707_07970  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
C1707_07975  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
C1707_07960  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
C1707_07965  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
C1707_13980  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
C1707_05915  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
C1707_14260  transketolase [KO:K00163] [EC:1.2.4.1]
C1707_18540  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
C1707_18535  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
C1707_18530  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cfh00010  Glycolysis / Gluconeogenesis
cfh00053  Ascorbate and aldarate metabolism
cfh00061  Fatty acid biosynthesis
cfh00071  Fatty acid degradation
cfh00190  Oxidative phosphorylation
cfh00220  Arginine biosynthesis
cfh00250  Alanine, aspartate and glutamate metabolism
cfh00280  Valine, leucine and isoleucine degradation
cfh00350  Tyrosine metabolism
cfh00470  D-Amino acid metabolism
cfh00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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