KEGG   PATHWAY: cfon00020
Entry
cfon00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Chitinibacter fontanus
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cfon00020  Citrate cycle (TCA cycle)
cfon00020

Module
cfon_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cfon00020]
cfon_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cfon00020]
cfon_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cfon00020]
cfon_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cfon00020]
Other DBs
GO: 0006099
Organism
Chitinibacter fontanus [GN:cfon]
Gene
HZU75_01400  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
HZU75_16190  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
HZU75_03320  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
HZU75_01395  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
HZU75_01390  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
HZU75_01385  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HZU75_03680  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
HZU75_01375  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
HZU75_01380  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
HZU75_01415  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
HZU75_01410  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
HZU75_01425  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
HZU75_01420  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
HZU75_16845  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
HZU75_01435  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
HZU75_03135  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
HZU75_03670  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
HZU75_03675  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cfon00010  Glycolysis / Gluconeogenesis
cfon00061  Fatty acid biosynthesis
cfon00071  Fatty acid degradation
cfon00190  Oxidative phosphorylation
cfon00220  Arginine biosynthesis
cfon00250  Alanine, aspartate and glutamate metabolism
cfon00280  Valine, leucine and isoleucine degradation
cfon00350  Tyrosine metabolism
cfon00470  D-Amino acid metabolism
cfon00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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