KEGG   PATHWAY: chf00020
Entry
chf00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Chitinophaga pendula
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
chf00020  Citrate cycle (TCA cycle)
chf00020

Module
chf_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:chf00020]
chf_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:chf00020]
chf_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:chf00020]
chf_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:chf00020]
chf_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:chf00020]
Other DBs
GO: 0006099
Organism
Chitinophaga pendula [GN:chf]
Gene
KTO58_00465  citrate (Si)-synthase, eukaryotic [KO:K01647] [EC:2.3.3.1]
KTO58_16755  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
KTO58_01810  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
KTO58_01815  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
KTO58_00990  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
KTO58_00995  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
KTO58_15980  2-oxo acid dehydrogenase subunit E2 [KO:K00658] [EC:2.3.1.61]
KTO58_03720  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KTO58_03945  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KTO58_28075  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
KTO58_21615  2-oxoacid:acceptor oxidoreductase subunit alpha [KO:K00174] [EC:1.2.7.3 1.2.7.11]
KTO58_22375  2-oxoacid:ferredoxin oxidoreductase subunit beta [KO:K00175] [EC:1.2.7.3 1.2.7.11]
KTO58_21330  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
KTO58_01745  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
KTO58_02245  fumarate reductase/succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
KTO58_02250  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
KTO58_02240  succinate dehydrogenase cytochrome b subunit [KO:K00241]
KTO58_26350  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
KTO58_18415  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
KTO58_18045  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
KTO58_10305  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
KTO58_00375  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
KTO58_10160  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
KTO58_16150  pyruvate dehydrogenase complex E1 component subunit beta [KO:K00162] [EC:1.2.4.1]
KTO58_28320  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
chf00010  Glycolysis / Gluconeogenesis
chf00053  Ascorbate and aldarate metabolism
chf00061  Fatty acid biosynthesis
chf00071  Fatty acid degradation
chf00190  Oxidative phosphorylation
chf00220  Arginine biosynthesis
chf00250  Alanine, aspartate and glutamate metabolism
chf00280  Valine, leucine and isoleucine degradation
chf00350  Tyrosine metabolism
chf00470  D-Amino acid metabolism
chf00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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