KEGG   PATHWAY: cie00020
Entry
cie00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Citrobacter sp. CRE-46
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cie00020  Citrate cycle (TCA cycle)
cie00020

Module
cie_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cie00020]
cie_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cie00020]
cie_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cie00020]
cie_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cie00020]
cie_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cie00020]
Other DBs
GO: 0006099
Organism
Citrobacter sp. CRE-46 [GN:cie]
Gene
AN232_22800  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
AN232_16965  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
AN232_09050  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
AN232_25850  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
AN232_19805  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AN232_22770  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
AN232_22765  2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
AN232_25885  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
AN232_22755  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
AN232_22760  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
AN232_22780  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
AN232_22775  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
AN232_22790  succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
AN232_22785  succinate dehydrogenase membrane anchor subunit [KO:K00242]
AN232_01745  fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
AN232_01750  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
AN232_01755  fumarate reductase subunit FrdC [KO:K00246]
AN232_01760  fumarate reductase subunit FrdD [KO:K00247]
AN232_18450  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
AN232_02225  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
AN232_22730  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
AN232_18445  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
AN232_18930  fumarate hydratase FumD [KO:K01675] [EC:4.2.1.2]
AN232_08685  transcriptional regulator [KO:K01774] [EC:4.2.1.2]
AN232_07065  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AN232_12700  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
AN232_06195  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
AN232_25895  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
AN232_25890  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
AN232_17350  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cie00010  Glycolysis / Gluconeogenesis
cie00053  Ascorbate and aldarate metabolism
cie00061  Fatty acid biosynthesis
cie00071  Fatty acid degradation
cie00190  Oxidative phosphorylation
cie00220  Arginine biosynthesis
cie00250  Alanine, aspartate and glutamate metabolism
cie00280  Valine, leucine and isoleucine degradation
cie00350  Tyrosine metabolism
cie00470  D-Amino acid metabolism
cie00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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