KEGG   PATHWAY: cif00020
Entry
cif00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Citrobacter sp. FDAARGOS_156
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cif00020  Citrate cycle (TCA cycle)
cif00020

Module
cif_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cif00020]
cif_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cif00020]
cif_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cif00020]
cif_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cif00020]
cif_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cif00020]
Other DBs
GO: 0006099
Organism
Citrobacter sp. FDAARGOS_156 [GN:cif]
Gene
AL515_08160  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
AL515_13125  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
AL515_05395  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
AL515_10395  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
AL515_08185  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
AL515_08190  dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
AL515_05380  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
AL515_08200  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
AL515_08195  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
AL515_08175  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
AL515_08180  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
AL515_08165  succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
AL515_08170  succinate dehydrogenase membrane anchor subunit [KO:K00242]
AL515_03670  fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
AL515_03665  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
AL515_03660  fumarate reductase subunit FrdC [KO:K00246]
AL515_03655  fumarate reductase subunit FrdD [KO:K00247]
AL515_03375  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
AL515_08225  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
AL515_11700  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
AL515_11705  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
AL515_11140  fumarate hydratase FumD [KO:K01675] [EC:4.2.1.2]
AL515_20985  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
AL515_15565  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
AL515_21690  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
AL515_05370  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
AL515_05375  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
AL515_12760  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cif00010  Glycolysis / Gluconeogenesis
cif00053  Ascorbate and aldarate metabolism
cif00061  Fatty acid biosynthesis
cif00071  Fatty acid degradation
cif00190  Oxidative phosphorylation
cif00220  Arginine biosynthesis
cif00250  Alanine, aspartate and glutamate metabolism
cif00280  Valine, leucine and isoleucine degradation
cif00350  Tyrosine metabolism
cif00470  D-Amino acid metabolism
cif00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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