KEGG   PATHWAY: cir00020
Entry
cir00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Citrobacter sp. CFNIH10
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cir00020  Citrate cycle (TCA cycle)
cir00020

Module
cir_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cir00020]
cir_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cir00020]
cir_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cir00020]
cir_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cir00020]
cir_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cir00020]
Other DBs
GO: 0006099
Organism
Citrobacter sp. CFNIH10 [GN:cir]
Gene
C2U53_17090  gltA; citrate synthase [KO:K01647] [EC:2.3.3.1]
C2U53_23100  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
C2U53_04280  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
C2U53_20725  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
C2U53_17125  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
C2U53_17130  dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
C2U53_04300  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
C2U53_17145  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
C2U53_17140  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
C2U53_17115  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
C2U53_17120  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
C2U53_17105  sdhC; succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
C2U53_17110  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
C2U53_12575  fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
C2U53_12570  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
C2U53_12565  fumarate reductase subunit FrdC [KO:K00246]
C2U53_12560  fumarate reductase subunit FrdD [KO:K00247]
C2U53_17210  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
C2U53_21735  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
C2U53_12200  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
C2U53_21740  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
C2U53_21405  fumarate hydratase FumD [KO:K01675] [EC:4.2.1.2]
C2U53_05030  transcriptional regulator [KO:K01774] [EC:4.2.1.2]
C2U53_06850  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
C2U53_27040  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
C2U53_07620  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
C2U53_04310  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
C2U53_04305  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
C2U53_22700  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cir00010  Glycolysis / Gluconeogenesis
cir00053  Ascorbate and aldarate metabolism
cir00061  Fatty acid biosynthesis
cir00071  Fatty acid degradation
cir00190  Oxidative phosphorylation
cir00220  Arginine biosynthesis
cir00250  Alanine, aspartate and glutamate metabolism
cir00280  Valine, leucine and isoleucine degradation
cir00350  Tyrosine metabolism
cir00470  D-Amino acid metabolism
cir00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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