KEGG   PATHWAY: cix00020
Entry
cix00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Citrobacter sp. XT1-2-2
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cix00020  Citrate cycle (TCA cycle)
cix00020

Module
cix_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cix00020]
cix_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cix00020]
cix_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cix00020]
cix_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cix00020]
cix_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cix00020]
Other DBs
GO: 0006099
Organism
Citrobacter sp. XT1-2-2 [GN:cix]
Gene
M4I31_16065  citrate synthase [KO:K01647] [EC:2.3.3.1]
M4I31_10745  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
M4I31_19555  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
M4I31_04330  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
M4I31_13785  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
M4I31_16035  sucA; 2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
M4I31_16030  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
M4I31_19580  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
M4I31_16020  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
M4I31_16025  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
M4I31_16045  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
M4I31_16040  sdhB; succinate dehydrogenase iron-sulfur subunit SdhB [KO:K00240] [EC:1.3.5.1]
M4I31_16055  sdhC; succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
M4I31_16050  sdhD; succinate dehydrogenase membrane anchor subunit [KO:K00242]
M4I31_21515  frdA; fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
M4I31_21520  frdB; fumarate reductase iron-sulfur protein [KO:K00245] [EC:1.3.5.1]
M4I31_21525  frdC; fumarate reductase subunit FrdC [KO:K00246]
M4I31_21530  frdD; fumarate reductase subunit FrdD [KO:K00247]
M4I31_12240  fumB; class I fumarate hydratase [KO:K01676] [EC:4.2.1.2]
M4I31_15995  class I fumarate hydratase [KO:K01676] [EC:4.2.1.2]
M4I31_21675  fumA; class I fumarate hydratase FumA [KO:K01676] [EC:4.2.1.2]
M4I31_12235  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
M4I31_12910  fumD; fumarate hydratase FumD [KO:K01675] [EC:4.2.1.2]
M4I31_02505  mdh; malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
M4I31_07905  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
M4I31_01660  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
M4I31_19590  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
M4I31_19585  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
M4I31_11140  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cix00010  Glycolysis / Gluconeogenesis
cix00053  Ascorbate and aldarate metabolism
cix00061  Fatty acid biosynthesis
cix00071  Fatty acid degradation
cix00190  Oxidative phosphorylation
cix00220  Arginine biosynthesis
cix00250  Alanine, aspartate and glutamate metabolism
cix00280  Valine, leucine and isoleucine degradation
cix00350  Tyrosine metabolism
cix00470  D-Amino acid metabolism
cix00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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