KEGG   PATHWAY: cmk03082
Entry
cmk03082                    Pathway                                
Name
ATP-dependent chromatin remodeling - Callorhinchus milii (elephant shark)
Class
Genetic Information Processing; Chromosome
Pathway map
cmk03082  ATP-dependent chromatin remodeling
cmk03082

Organism
Callorhinchus milii (elephant shark) [GN:cmk]
Gene
103180602  smarca5; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [KO:K11654] [EC:5.6.2.-]
103178552  baz1a; bromodomain adjacent to zinc finger domain protein 1A [KO:K11655]
103180512  baz1b; tyrosine-protein kinase BAZ1B isoform X2 [KO:K11658]
103189565  bromodomain adjacent to zinc finger domain protein 2A isoform X1 [KO:K15224]
103176356  baz2ba; bromodomain adjacent to zinc finger domain protein 2B isoform X8 [KO:K26167]
103181060  chrac1; chromatin accessibility complex protein 1 [KO:K11656]
103182977  pole3; DNA polymerase epsilon subunit 3 [KO:K02326] [EC:2.7.7.7]
103188608  remodeling and spacing factor 1 [KO:K11657]
103178664  smarca1; probable global transcription activator SNF2L1 [KO:K11727] [EC:5.6.2.-]
103175610  bptf; LOW QUALITY PROTEIN: nucleosome-remodeling factor subunit BPTF [KO:K11728]
103185663  rbbp4; histone-binding protein RBBP4 isoform X1 [KO:K10752]
103172762  cunh17orf49; chromatin complexes subunit BAP18 [KO:K23406]
103179423  cat eye syndrome critical region protein 2 [KO:K25830]
103182606  histone deacetylase 2 isoform X1 [KO:K06067] [EC:3.5.1.98]
103185671  hdac1; histone deacetylase 1 [KO:K06067] [EC:3.5.1.98]
103189694  mbd3a; methyl-CpG-binding domain protein 3a isoform X1 [KO:K11591]
103177994  metastasis-associated protein MTA3 [KO:K11660]
103187519  mta1; metastasis-associated protein MTA1 isoform X1 [KO:K11660]
103191248  metastasis-associated protein MTA1 isoform X1 [KO:K11660]
103181996  gatad2ab; GATA zinc finger domain containing 2Ab isoform X1 [KO:K23194]
103178063  phf6; PHD finger protein 6 [KO:K23310]
103188014  cyclin-dependent kinase 2-associated protein 1 isoform X1 [KO:K26454]
103178096  smarca2; probable global transcription activator SNF2L2 isoform X1 [KO:K11647] [EC:5.6.2.-]
103187553  smarca4a; SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4a [KO:K11647] [EC:5.6.2.-]
103190032  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A isoform X1 [KO:K11648]
103190508  smarcc1a; SWI/SNF complex subunit SMARCC1 [KO:K11649]
103172802  smarcc2; SWI/SNF complex subunit SMARCC2 isoform X1 [KO:K11649]
103190642  smarcd3b; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 isoform X1 [KO:K11650]
103183838  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 isoform X1 [KO:K11650]
103191473  smarcd1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 [KO:K11650]
103189119  smarce1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 [KO:K11651]
103175484  actg1; actin, cytoplasmic 2 [KO:K05692]
103186865  actb; actin, cytoplasmic 1 [KO:K05692]
103175868  actl6a; actin-like protein 6A [KO:K11340]
121851591  B-cell CLL/lymphoma 7 protein family member B-like isoform X1 [KO:K25605]
103180510  B-cell CLL/lymphoma 7 protein family member B isoform X1 [KO:K25605]
103184298  bcl7a; B-cell CLL/lymphoma 7 protein family member A isoform X1 [KO:K25605]
103179710  ss18; protein SSXT isoform X1 [KO:K15623]
103186257  calcium-responsive transactivator isoform X1 [KO:K15623]
103188067  protein SSXT [KO:K15623]
103179567  arid1ab; AT-rich interactive domain-containing protein 1A isoform X1 [KO:K11653]
103186452  arid1b; AT-rich interactive domain-containing protein 1B isoform X1 [KO:K11653]
103178481  dpf3; zinc finger protein DPF3 isoform X2 [KO:K22198]
103173677  dpf1; zinc finger protein neuro-d4 [KO:K22198]
103184680  arid2; AT-rich interactive domain-containing protein 2 isoform X1 [KO:K11765]
103183908  AT-rich interactive domain-containing protein 2-like isoform X1 [KO:K11765]
103188769  pbrm1; protein polybromo-1 isoform X1 [KO:K11757]
103176082  brd7; bromodomain-containing protein 7 [KO:K11723]
103174724  phf10; PHD finger protein 10 [KO:K22197]
103176230  brd9; bromodomain-containing protein 9 isoform X1 [KO:K22184]
103189222  bicra; LOW QUALITY PROTEIN: BRD4-interacting chromatin-remodeling complex-associated protein [KO:K25612]
103177999  bicral; BRD4-interacting chromatin-remodeling complex-associated protein-like isoform X1 [KO:K25613]
103190053  ino80; chromatin-remodeling ATPase INO80 [KO:K11665] [EC:5.6.2.-]
103183115  ino80b; INO80 complex subunit B [KO:K11666]
103181178  ino80c; INO80 complex subunit C [KO:K11667]
103182875  ino80db; INO80 complex subunit D [KO:K11668]
103180261  nfrkb; nuclear factor related to kappa-B-binding protein isoform X1 [KO:K11671]
103189562  mcrs1; microspherule protein 1 isoform X2 [KO:K11674]
103180050  uchl5; ubiquitin carboxyl-terminal hydrolase isozyme L5 [KO:K05610] [EC:3.4.19.12]
103176669  ruvbl1; ruvB-like 1 [KO:K04499] [EC:5.6.2.4]
121851299  ruvbl2; ruvB-like 2 [KO:K11338] [EC:5.6.2.3]
103186284  actr5; actin-related protein 5 [KO:K11672]
103176820  actr8; actin-related protein 8 [KO:K11673]
103175333  yy1a; transcriptional repressor protein YY1a [KO:K09201]
103182782  dmap1; DNA methyltransferase 1-associated protein 1 [KO:K11324]
103185310  yeats4; YEATS domain-containing protein 4 isoform X2 [KO:K11341]
103181459  core histone macro-H2A.2 isoform X1 [KO:K11251]
103188720  histone H2A [KO:K11251]
103183694  core histone macro-H2A.1 isoform X1 [KO:K11251]
103187764  histone H2A.V [KO:K11251]
103171602  histone H2A-like [KO:K11251]
103171982  histone H2AX-like [KO:K11251]
103172042  histone H2A-like [KO:K11251]
103172251  histone H2A-like [KO:K11251]
103172283  histone H2A-like [KO:K11251]
121851545  histone H2A-like [KO:K11251]
121851546  histone H2A-like [KO:K11251]
121851547  histone H2A-like [KO:K11251]
121851556  histone H2A-like [KO:K11251]
121851748  histone H2A-like [KO:K11251]
103190725  actr6; actin-related protein 6 isoform X1 [KO:K11662]
103188025  ep400; LOW QUALITY PROTEIN: E1A-binding protein p400 [KO:K11320] [EC:5.6.2.-]
103178691  transformation/transcription domain-associated protein [KO:K08874]
103186276  morf4l1; mortality factor 4-like protein 1 [KO:K11339]
103190987  LOW QUALITY PROTEIN: MRG/MORF4L-binding protein [KO:K11343]
103185119  brd8a; bromodomain-containing protein 8 isoform X2 [KO:K11321]
103186125  ing3; inhibitor of growth protein 3 isoform X1 [KO:K11319]
103180463  epc2; enhancer of polycomb homolog 2 isoform X1 [KO:K11322]
103188816  epc1a; enhancer of polycomb homolog 1 isoform X1 [KO:K11322]
103187314  meaf6; chromatin modification-related protein MEAF6 isoform X1 [KO:K11344]
103173161  histone acetyltransferase KAT5 [KO:K11304] [EC:2.3.1.48]
Reference
PMID:31769422
  Authors
Hasan N, Ahuja N
  Title
The Emerging Roles of ATP-Dependent Chromatin Remodeling Complexes in Pancreatic Cancer.
  Journal
Cancers (Basel) 11:cancers11121859 (2019)
DOI:10.3390/cancers11121859
Reference
PMID:32001526
  Authors
He S, Wu Z, Tian Y, Yu Z, Yu J, Wang X, Li J, Liu B, Xu Y
  Title
Structure of nucleosome-bound human BAF complex.
  Journal
Science 367:875-881 (2020)
DOI:10.1126/science.aaz9761
Reference
PMID:33941852
  Authors
Wanior M, Kramer A, Knapp S, Joerger AC
  Title
Exploiting vulnerabilities of SWI/SNF chromatin remodelling complexes for cancer therapy.
  Journal
Oncogene 40:3637-3654 (2021)
DOI:10.1038/s41388-021-01781-x
Reference
PMID:20493981
  Authors
Burgio G, Onorati MC, Corona DF
  Title
Chromatin remodeling regulation by small molecules and metabolites.
  Journal
Biochim Biophys Acta 1799:671-80 (2010)
DOI:10.1016/j.bbagrm.2010.05.007
KO pathway
ko03082   
LinkDB

DBGET integrated database retrieval system