KEGG   PATHWAY: colw00020
Entry
colw00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Colwellia sp. PAMC 21821
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
colw00020  Citrate cycle (TCA cycle)
colw00020

Module
colw_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:colw00020]
colw_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:colw00020]
colw_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:colw00020]
colw_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:colw00020]
colw_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:colw00020]
Other DBs
GO: 0006099
Organism
Colwellia sp. PAMC 21821 [GN:colw]
Gene
A3Q33_16325  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
A3Q33_18610  acnA; aconitate hydratase [KO:K01681] [EC:4.2.1.3]
A3Q33_05795  aconitate hydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
A3Q33_17020  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
A3Q33_17025  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
A3Q33_15930  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
A3Q33_16350  2-oxoglutarate dehydrogenase subunit E1 [KO:K00164] [EC:1.2.4.2]
A3Q33_16355  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
A3Q33_05810  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
A3Q33_16365  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
A3Q33_16360  sucC; succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
A3Q33_16340  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
A3Q33_16345  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
A3Q33_16330  succinate dehydrogenase [KO:K00241]
A3Q33_16335  sdhD; succinate dehydrogenase [KO:K00242]
A3Q33_13780  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
A3Q33_06680  aspA; aspartate ammonia-lyase [KO:K01679] [EC:4.2.1.2]
A3Q33_06015  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
A3Q33_07380  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
A3Q33_05820  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
A3Q33_05815  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
colw00010  Glycolysis / Gluconeogenesis
colw00053  Ascorbate and aldarate metabolism
colw00061  Fatty acid biosynthesis
colw00071  Fatty acid degradation
colw00190  Oxidative phosphorylation
colw00220  Arginine biosynthesis
colw00250  Alanine, aspartate and glutamate metabolism
colw00280  Valine, leucine and isoleucine degradation
colw00350  Tyrosine metabolism
colw00470  D-Amino acid metabolism
colw00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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