KEGG   PATHWAY: cov00020
Entry
cov00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Colwellia sp. Arc7-635
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cov00020  Citrate cycle (TCA cycle)
cov00020

Module
cov_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cov00020]
cov_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cov00020]
cov_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cov00020]
cov_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cov00020]
cov_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cov00020]
Other DBs
GO: 0006099
Organism
Colwellia sp. Arc7-635 [GN:cov]
Gene
EKO29_08985  citrate synthase [KO:K01647] [EC:2.3.3.1]
EKO29_17850  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
EKO29_17855  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
EKO29_11410  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
EKO29_11415  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
EKO29_08550  isocitrate dehydrogenase [KO:K00030] [EC:1.1.1.41]
EKO29_09010  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
EKO29_09015  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
EKO29_17870  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
EKO29_09025  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
EKO29_09020  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
EKO29_09000  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
EKO29_09005  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
EKO29_08990  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
EKO29_08995  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
EKO29_05360  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
EKO29_11635  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
EKO29_18075  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
EKO29_01135  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
EKO29_17880  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
EKO29_17875  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cov00010  Glycolysis / Gluconeogenesis
cov00061  Fatty acid biosynthesis
cov00071  Fatty acid degradation
cov00190  Oxidative phosphorylation
cov00220  Arginine biosynthesis
cov00250  Alanine, aspartate and glutamate metabolism
cov00280  Valine, leucine and isoleucine degradation
cov00350  Tyrosine metabolism
cov00470  D-Amino acid metabolism
cov00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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