KEGG   PATHWAY: cprt00020
Entry
cprt00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Cellulosimicrobium protaetiae
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cprt00020  Citrate cycle (TCA cycle)
cprt00020

Module
cprt_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cprt00020]
cprt_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cprt00020]
cprt_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cprt00020]
cprt_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cprt00020]
Other DBs
GO: 0006099
Organism
Cellulosimicrobium protaetiae [GN:cprt]
Gene
FIC82_015170  citrate synthase [KO:K01647] [EC:2.3.3.1]
FIC82_005460  bifunctional 2-methylcitrate synthase/citrate synthase [KO:K01647] [EC:2.3.3.1]
FIC82_012790  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
FIC82_016090  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
FIC82_008050  multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit [KO:K01616] [EC:2.2.1.5 4.1.1.71 1.2.4.2 2.3.1.61]
FIC82_009090  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FIC82_010300  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
FIC82_016160  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
FIC82_016165  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
FIC82_015080  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
FIC82_016990  FAD-binding protein [KO:K00239] [EC:1.3.5.1]
FIC82_015085  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
FIC82_015070  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
FIC82_015075  succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
FIC82_019670  FAD-binding protein [KO:K00244] [EC:1.3.5.1]
FIC82_019665  4Fe-4S dicluster domain-containing protein [KO:K00245] [EC:1.3.5.1]
FIC82_015325  class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
FIC82_016085  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
FIC82_009470  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
FIC82_012065  pyruvate carboxylase [KO:K01958] [EC:6.4.1.1]
FIC82_017515  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
FIC82_010020  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
FIC82_010295  sucB; 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cprt00010  Glycolysis / Gluconeogenesis
cprt00053  Ascorbate and aldarate metabolism
cprt00061  Fatty acid biosynthesis
cprt00071  Fatty acid degradation
cprt00190  Oxidative phosphorylation
cprt00220  Arginine biosynthesis
cprt00250  Alanine, aspartate and glutamate metabolism
cprt00280  Valine, leucine and isoleucine degradation
cprt00350  Tyrosine metabolism
cprt00470  D-Amino acid metabolism
cprt00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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