KEGG   PATHWAY: crb00630
Entry
crb00630                    Pathway                                
Name
Glyoxylate and dicarboxylate metabolism - Capsella rubella (pink shepherd's-purse)
Class
Metabolism; Carbohydrate metabolism
Pathway map
crb00630  Glyoxylate and dicarboxylate metabolism
crb00630

Module
crb_M00012  Glyoxylate cycle [PATH:crb00630]
crb_M00532  Photorespiration [PATH:crb00630]
crb_M00621  Glycine cleavage system [PATH:crb00630]
Other DBs
GO: 0046487 0043648
Organism
Capsella rubella (pink shepherd's-purse) [GN:crb]
Gene
17891529  isocitrate lyase [KO:K01637] [EC:4.1.3.1]
17878350  acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal isoform X2 [KO:K01895] [EC:6.2.1.1]
17893002  acetate/butyrate--CoA ligase AAE7, peroxisomal [KO:K01913] [EC:6.2.1.1 6.2.1.2]
17881132  malate synthase [KO:K01638] [EC:2.3.3.9]
17875863  malate dehydrogenase 1, cytoplasmic [KO:K00025] [EC:1.1.1.37]
17874770  malate dehydrogenase 3, cytoplasmic [KO:K00025] [EC:1.1.1.37]
111832567  malate dehydrogenase 1, cytoplasmic [KO:K00025] [EC:1.1.1.37]
17885016  malate dehydrogenase, chloroplastic [KO:K00026] [EC:1.1.1.37]
17893797  malate dehydrogenase 2, peroxisomal [KO:K00026] [EC:1.1.1.37]
17900923  malate dehydrogenase 1, mitochondrial [KO:K00026] [EC:1.1.1.37]
17888110  malate dehydrogenase 1, peroxisomal [KO:K00026] [EC:1.1.1.37]
17886696  citrate synthase 2, peroxisomal [KO:K01647] [EC:2.3.3.1]
17886202  citrate synthase 5, mitochondrial [KO:K01647] [EC:2.3.3.1]
17888880  citrate synthase 3, peroxisomal [KO:K01647] [EC:2.3.3.1]
17889833  citrate synthase 4, mitochondrial [KO:K01647] [EC:2.3.3.1]
17885578  LOW QUALITY PROTEIN: citrate synthase 1, peroxisomal [KO:K01647] [EC:2.3.3.1]
17879904  aconitate hydratase 2, mitochondrial [KO:K01681] [EC:4.2.1.3]
17877899  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
17893162  aconitate hydratase 3, mitochondrial [KO:K01681] [EC:4.2.1.3]
17875265  acetyl-CoA acetyltransferase, cytosolic 1 [KO:K00626] [EC:2.3.1.9]
17874773  probable acetyl-CoA acetyltransferase, cytosolic 2 isoform X1 [KO:K00626] [EC:2.3.1.9]
17878827  peroxisomal (S)-2-hydroxy-acid oxidase GLO5 [KO:K11517] [EC:1.1.3.15]
17892610  peroxisomal (S)-2-hydroxy-acid oxidase GLO4 [KO:K11517] [EC:1.1.3.15]
17895117  (S)-2-hydroxy-acid oxidase GLO1 [KO:K11517] [EC:1.1.3.15]
17891259  (S)-2-hydroxy-acid oxidase GLO1 isoform X1 [KO:K11517] [EC:1.1.3.15]
17893193  (S)-2-hydroxy-acid oxidase GLO2 isoform X1 [KO:K11517] [EC:1.1.3.15]
17881022  catalase-2 [KO:K03781] [EC:1.11.1.6]
17897514  catalase-1 [KO:K03781] [EC:1.11.1.6]
17898632  catalase-3 [KO:K03781] [EC:1.11.1.6]
17898080  glyoxylate/hydroxypyruvate reductase HPR3 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
17894111  glyoxylate/hydroxypyruvate reductase A HPR2 [KO:K15919] [EC:1.1.1.79 1.1.1.81]
17900051  glyoxylate/succinic semialdehyde reductase 2, chloroplastic [KO:K18121] [EC:1.1.1.79 1.1.1.-]
17892502  glyoxylate/succinic semialdehyde reductase 1 [KO:K18121] [EC:1.1.1.79 1.1.1.-]
17896362  glycerate dehydrogenase HPR, peroxisomal [KO:K15893] [EC:1.1.1.29]
17880237  phosphoglycolate phosphatase 1B, chloroplastic [KO:K19269] [EC:3.1.3.18 3.1.3.48]
17876528  phosphoglycolate phosphatase 2 [KO:K19269] [EC:3.1.3.18 3.1.3.48]
25194288  rbcL; ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [KO:K01601] [EC:4.1.1.39]
17879562  ribulose bisphosphate carboxylase small chain 3B, chloroplastic [KO:K01602] [EC:4.1.1.39]
17878197  ribulose bisphosphate carboxylase small chain 3B, chloroplastic isoform X2 [KO:K01602] [EC:4.1.1.39]
17878658  ribulose bisphosphate carboxylase small chain 3B, chloroplastic [KO:K01602] [EC:4.1.1.39]
17895103  ribulose bisphosphate carboxylase small chain 1B, chloroplastic isoform X1 [KO:K01602] [EC:4.1.1.39]
17893108  serine--glyoxylate aminotransferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
17895448  glutamate--glyoxylate aminotransferase 2 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
17897757  glutamate--glyoxylate aminotransferase 1 [KO:K14272] [EC:2.6.1.4 2.6.1.2 2.6.1.44]
17889161  ferredoxin-dependent glutamate synthase 2, chloroplastic isoform X1 [KO:K00284] [EC:1.4.7.1]
17882431  ferredoxin-dependent glutamate synthase 1, chloroplastic/mitochondrial [KO:K00284] [EC:1.4.7.1]
17879721  glutamine synthetase, chloroplastic/mitochondrial [KO:K01915] [EC:6.3.1.2]
17878811  glutamine synthetase cytosolic isozyme 1-1 isoform X1 [KO:K01915] [EC:6.3.1.2]
17894226  glutamine synthetase cytosolic isozyme 1-2 isoform X1 [KO:K01915] [EC:6.3.1.2]
17899478  glutamine synthetase cytosolic isozyme 1-5 [KO:K01915] [EC:6.3.1.2]
17890678  glutamine synthetase cytosolic isozyme 1-3 [KO:K01915] [EC:6.3.1.2]
17883809  glutamine synthetase cytosolic isozyme 1-4 isoform X1 [KO:K01915] [EC:6.3.1.2]
17880870  serine hydroxymethyltransferase 5 [KO:K00600] [EC:2.1.2.1]
17878531  serine hydroxymethyltransferase 3, chloroplastic [KO:K00600] [EC:2.1.2.1]
17877753  serine hydroxymethyltransferase 4 [KO:K00600] [EC:2.1.2.1]
17882962  serine hydroxymethyltransferase 2, mitochondrial [KO:K00600] [EC:2.1.2.1]
17898642  serine hydroxymethyltransferase 6 [KO:K00600] [EC:2.1.2.1]
17896928  serine hydroxymethyltransferase 7 [KO:K00600] [EC:2.1.2.1]
17878529  serine hydroxymethyltransferase 1, mitochondrial [KO:K00600] [EC:2.1.2.1]
17877678  glycine dehydrogenase (decarboxylating) 1, mitochondrial [KO:K00281] [EC:1.4.4.2]
17887963  glycine dehydrogenase (decarboxylating) 2, mitochondrial [KO:K00281] [EC:1.4.4.2]
17898209  aminomethyltransferase, mitochondrial [KO:K00605] [EC:2.1.2.10]
17880512  dihydrolipoyl dehydrogenase 2, chloroplastic [KO:K00382] [EC:1.8.1.4]
17890612  dihydrolipoyl dehydrogenase 1, chloroplastic isoform X1 [KO:K00382] [EC:1.8.1.4]
17893862  dihydrolipoyl dehydrogenase 2, mitochondrial [KO:K00382] [EC:1.8.1.4]
17899685  dihydrolipoyl dehydrogenase 1, mitochondrial [KO:K00382] [EC:1.8.1.4]
17883152  glycine cleavage system H protein 2, mitochondrial [KO:K02437]
17900410  glycine cleavage system H protein 3, mitochondrial [KO:K02437]
17889353  glycine cleavage system H protein 2, mitochondrial [KO:K02437]
17888794  glycine cleavage system H protein 1, mitochondrial [KO:K02437]
17894114  D-glycerate 3-kinase, chloroplastic [KO:K15918] [EC:2.7.1.31]
17883163  formate dehydrogenase, chloroplastic/mitochondrial [KO:K00122] [EC:1.17.1.9]
17898383  formate dehydrogenase, chloroplastic/mitochondrial [KO:K00122] [EC:1.17.1.9]
17880112  formyltetrahydrofolate deformylase 2, mitochondrial isoform X1 [KO:K01433] [EC:3.5.1.10]
17877367  formyltetrahydrofolate deformylase 1, mitochondrial [KO:K01433] [EC:3.5.1.10]
17879429  uncharacterized protein LOC17879429 [KO:K01455] [EC:3.5.1.49]
17885535  oxalate--CoA ligase [KO:K22133] [EC:6.2.1.8]
Compound
C00007  Oxygen
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00024  Acetyl-CoA
C00025  L-Glutamate
C00026  2-Oxoglutarate
C00027  Hydrogen peroxide
C00033  Acetate
C00036  Oxaloacetate
C00037  Glycine
C00042  Succinate
C00048  Glyoxylate
C00058  Formate
C00064  L-Glutamine
C00065  L-Serine
C00091  Succinyl-CoA
C00100  Propanoyl-CoA
C00111  Glycerone phosphate
C00136  Butanoyl-CoA
C00149  (S)-Malate
C00158  Citrate
C00160  Glycolate
C00168  Hydroxypyruvate
C00197  3-Phospho-D-glycerate
C00209  Oxalate
C00258  D-Glycerate
C00266  Glycolaldehyde
C00311  Isocitrate
C00313  Oxalyl-CoA
C00332  Acetoacetyl-CoA
C00417  cis-Aconitate
C00552  meso-Tartaric acid
C00631  2-Phospho-D-glycerate
C00683  (S)-Methylmalonyl-CoA
C00798  Formyl-CoA
C00877  Crotonoyl-CoA
C00888  Pentanoyl-CoA
C00898  (R,R)-Tartaric acid
C00975  Dihydroxyfumarate
C00988  2-Phosphoglycolate
C01127  4-Hydroxy-2-oxoglutarate
C01146  2-Hydroxy-3-oxopropanoate
C01182  D-Ribulose 1,5-bisphosphate
C01213  (R)-Methylmalonyl-CoA
C01380  Ethylene glycol
C01732  Mesaconate
C01989  3-Ethylmalate
C01990  3-Oxalomalate
C02123  3-Propylmalate
C02405  Formyl phosphate
C03217  2-Hydroxy-3-oxoadipate
C03459  2-Hydroxy-3-oxosuccinate
C03548  trans-2,3-Epoxysuccinate
C03561  (R)-3-Hydroxybutanoyl-CoA
C03618  L-threo-3-Methylaspartate
C04348  L-Malyl-CoA
C06027  L-erythro-3-Methylmalyl-CoA
C06028  2-Methylfumaryl-CoA
C06049  N-Formylderivatives
C18026  (2S)-Ethylmalonyl-CoA
C18324  (2S)-Methylsuccinyl-CoA
C20238  (2R)-Ethylmalonyl-CoA
C22337  D-Ribulose 1-phosphate
Reference
PMID:10978349
  Authors
Njau RK, Herndon CA, Hawes JW.
  Title
Novel beta-hydroxyacid dehydrogenases in Escherichia coli and Haemophilus influenzae.
  Journal
J Biol Chem 275:38780-6 (2000)
DOI:10.1074/jbc.M007432200
Reference
PMID:18065535
  Authors
Zarzycki J, Schlichting A, Strychalsky N, Muller M, Alber BE, Fuchs G
  Title
Mesaconyl-coenzyme A hydratase, a new enzyme of two central carbon metabolic pathways in bacteria.
  Journal
J Bacteriol 190:1366-74 (2008)
DOI:10.1128/JB.01621-07
Reference
PMID:18819910
  Authors
Erb TJ, Retey J, Fuchs G, Alber BE
  Title
Ethylmalonyl-CoA mutase from Rhodobacter sphaeroides defines a new subclade of coenzyme B12-dependent acyl-CoA mutases.
  Journal
J Biol Chem 283:32283-93 (2008)
DOI:10.1074/jbc.M805527200
Reference
PMID:9596633
  Authors
Coschigano KT, Melo-Oliveira R, Lim J, Coruzzi GM
  Title
Arabidopsis gls mutants and distinct Fd-GOGAT genes. Implications for photorespiration and primary nitrogen assimilation.
  Journal
Plant Cell 10:741-52 (1998)
DOI:10.1105/tpc.10.5.741
Reference
PMID:16407450
  Authors
Masclaux-Daubresse C, Reisdorf-Cren M, Pageau K, Lelandais M, Grandjean O, Kronenberger J, Valadier MH, Feraud M, Jouglet T, Suzuki A
  Title
Glutamine synthetase-glutamate synthase pathway and glutamate dehydrogenase play distinct roles in the sink-source nitrogen cycle in tobacco.
  Journal
Plant Physiol 140:444-56 (2006)
DOI:10.1104/pp.105.071910
Reference
PMID:21252347
  Authors
Khomyakova M, Bukmez O, Thomas LK, Erb TJ, Berg IA
  Title
A methylaspartate cycle in haloarchaea.
  Journal
Science 331:334-7 (2011)
DOI:10.1126/science.1196544
Reference
PMID:11513957
  Authors
Serrano JA, Bonete MJ
  Title
Sequencing, phylogenetic and transcriptional analysis of the glyoxylate bypass operon (ace) in the halophilic archaeon Haloferax volcanii.
  Journal
Biochim Biophys Acta 1520:154-62 (2001)
DOI:10.1016/S0167-4781(01)00263-9
Related
pathway
crb00010  Glycolysis / Gluconeogenesis
crb00020  Citrate cycle (TCA cycle)
crb00030  Pentose phosphate pathway
crb00053  Ascorbate and aldarate metabolism
crb00071  Fatty acid degradation
crb00230  Purine metabolism
crb00250  Alanine, aspartate and glutamate metabolism
crb00260  Glycine, serine and threonine metabolism
crb00620  Pyruvate metabolism
crb00710  Carbon fixation by Calvin cycle
crb00750  Vitamin B6 metabolism
crb00910  Nitrogen metabolism
KO pathway
ko00630   
LinkDB

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