KEGG   PATHWAY: crj00020
Entry
crj00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Comamonas resistens
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
crj00020  Citrate cycle (TCA cycle)
crj00020

Module
crj_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:crj00020]
crj_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:crj00020]
crj_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:crj00020]
crj_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:crj00020]
crj_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:crj00020]
Other DBs
GO: 0006099
Organism
Comamonas resistens [GN:crj]
Gene
QMY55_16645  citrate synthase [KO:K01647] [EC:2.3.3.1]
QMY55_16515  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
QMY55_16590  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
QMY55_13520  icd; NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
QMY55_13550  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
QMY55_13255  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
QMY55_13250  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
QMY55_11555  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
QMY55_13245  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
QMY55_22790  dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
QMY55_24380  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
QMY55_24385  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
QMY55_00410  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
QMY55_01130  acetyl-CoA hydrolase/transferase family protein [KO:K18118] [EC:2.8.3.18]
QMY55_16630  sdhA; succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
QMY55_16635  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
QMY55_16620  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
QMY55_16625  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
QMY55_07210  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
QMY55_07220  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
QMY55_16610  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
QMY55_17885  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
QMY55_00270  phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
QMY55_11540  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
QMY55_11545  aceF; dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
crj00010  Glycolysis / Gluconeogenesis
crj00053  Ascorbate and aldarate metabolism
crj00061  Fatty acid biosynthesis
crj00071  Fatty acid degradation
crj00190  Oxidative phosphorylation
crj00220  Arginine biosynthesis
crj00250  Alanine, aspartate and glutamate metabolism
crj00280  Valine, leucine and isoleucine degradation
crj00350  Tyrosine metabolism
crj00470  D-Amino acid metabolism
crj00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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