KEGG   PATHWAY: cser03430
Entry
cser03430                   Pathway                                
Name
Mismatch repair - Comamonas serinivorans
Description
DNA mismatch repair (MMR) is a highly conserved biological pathway that plays a key role in maintaining genomic stability. MMR corrects DNA mismatches generated during DNA replication, thereby preventing mutations from becoming permanent in dividing cells. MMR also suppresses homologous recombination and was recently shown to play a role in DNA damage signaling. Defects in MMR are associated with genome-wide instability, predisposition to certain types of cancer including HNPCC, resistance to certain chemotherapeutic agents, and abnormalities in meiosis and sterility in mammalian systems.
The Escherichia coli MMR pathway has been extensively studied and is well characterized. In E. coli, the mismatch-activated MutS-MutL-ATP complex licenses MutH to incise the nearest unmethylated GATC sequence. UvrD and an exonuclease generate a gap. This gap is filled by pol III and DNA ligase. The GATC sites are then methylated by Dam. Several human MMR proteins have been identified based on their homology to E. coli MMR proteins. These include human homologs of MutS and MutL. Although E. coli MutS and MutL proteins are homodimers, human MutS and MutL homologs are heterodimers. The role of hemimethylated dGATC sites as a signal for strand discrimination is not conserved from E. coli to human. Human MMR is presumed to be nick-directed in vivo, and is thought to discriminate daughter and template strands using a strand-specific nick.
Class
Genetic Information Processing; Replication and repair
Pathway map
cser03430  Mismatch repair
cser03430

Other DBs
GO: 0006298
Organism
Comamonas serinivorans [GN:cser]
Gene
CCO03_08920  DNA mismatch repair protein MutS [KO:K03555]
CCO03_06070  DNA mismatch repair protein MutL [KO:K03572]
CCO03_07735  DNA helicase II [KO:K03657] [EC:5.6.2.4]
CCO03_10345  exodeoxyribonuclease I [KO:K01141] [EC:3.1.11.1]
CCO03_10760  exodeoxyribonuclease VII large subunit [KO:K03601] [EC:3.1.11.6]
CCO03_11400  exodeoxyribonuclease VII small subunit [KO:K03602] [EC:3.1.11.6]
CCO03_05565  single-stranded-DNA-specific exonuclease RecJ [KO:K07462] [EC:3.1.-.-]
CCO03_17460  single-stranded DNA-binding protein [KO:K03111]
CCO03_08500  hypothetical protein [KO:K03111]
CCO03_14505  DNA polymerase III subunit alpha [KO:K02337] [EC:2.7.7.7]
CCO03_00045  DNA polymerase III subunit beta [KO:K02338] [EC:2.7.7.7]
CCO03_09735  hypothetical protein [KO:K02343] [EC:2.7.7.7]
CCO03_02070  DNA polymerase III subunit delta [KO:K02340] [EC:2.7.7.7]
CCO03_12825  DNA polymerase III subunit delta' [KO:K02341] [EC:2.7.7.7]
CCO03_08610  hypothetical protein [KO:K02342] [EC:2.7.7.7]
CCO03_13125  DNA polymerase III subunit epsilon [KO:K02342] [EC:2.7.7.7]
CCO03_12795  DNA polymerase III subunit chi [KO:K02339] [EC:2.7.7.7]
CCO03_13870  ligA; DNA ligase (NAD(+)) LigA [KO:K01972] [EC:6.5.1.2]
Reference
  Authors
Jiricny J.
  Title
The multifaceted mismatch-repair system.
  Journal
Nat Rev Mol Cell Biol 7:335-46 (2006)
DOI:10.1038/nrm1907
Reference
  Authors
Li GM.
  Title
Mechanisms and functions of DNA mismatch repair.
  Journal
Cell Res 18:85-98 (2008)
DOI:10.1038/cr.2007.115
Reference
  Authors
Marti TM, Kunz C, Fleck O.
  Title
DNA mismatch repair and mutation avoidance pathways.
  Journal
J Cell Physiol 191:28-41 (2002)
DOI:10.1002/jcp.10077
Reference
  Authors
Ikejima M, Shimada T.
  Title
[Molecular mechanism of mismatch repair]
  Journal
Tanpakushitsu Kakusan Koso 46:1124-9 (2001)
KO pathway
ko03430   
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