KEGG   PATHWAY: csi00020
Entry
csi00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Cronobacter malonaticus CMCC45402
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
csi00020  Citrate cycle (TCA cycle)
csi00020

Module
csi_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:csi00020]
csi_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:csi00020]
csi_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:csi00020]
csi_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:csi00020]
csi_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:csi00020]
Other DBs
GO: 0006099
Organism
Cronobacter malonaticus CMCC45402 [GN:csi]
Gene
P262_03947  type II citrate synthase [KO:K01647] [EC:2.3.3.1]
P262_02577  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
P262_04737  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
P262_03406  icd protein [KO:K00031] [EC:1.1.1.42]
P262_03941  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
P262_03939  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
P262_04744  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
P262_03936  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
P262_03938  Succinyl-CoA ligase [ADP-forming] subunit beta [KO:K01903] [EC:6.2.1.5]
P262_03943  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
P262_03942  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
P262_03946  succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
P262_03945  succinate dehydrogenase cytochrome b556 small membrane subunit [KO:K00242]
P262_00681  fumarate reductase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
P262_00680  fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
P262_00679  fumarate reductase subunit C [KO:K00246]
P262_00678  fumarate reductase subunit D [KO:K00247]
P262_03096  fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
P262_03093  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
P262_05318  hypothetical protein [KO:K00024] [EC:1.1.1.37]
P262_00217  putative malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
P262_00402  phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
P262_04750  pyruvate dehydrogenase subunit E1 [KO:K00163] [EC:1.2.4.1]
P262_04747  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
P262_02674  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
csi00010  Glycolysis / Gluconeogenesis
csi00053  Ascorbate and aldarate metabolism
csi00061  Fatty acid biosynthesis
csi00071  Fatty acid degradation
csi00190  Oxidative phosphorylation
csi00220  Arginine biosynthesis
csi00250  Alanine, aspartate and glutamate metabolism
csi00280  Valine, leucine and isoleucine degradation
csi00350  Tyrosine metabolism
csi00470  D-Amino acid metabolism
csi00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system