KEGG   PATHWAY: csj00020
Entry
csj00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Cronobacter sakazakii ATCC 29544
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
csj00020  Citrate cycle (TCA cycle)
csj00020

Module
csj_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:csj00020]
csj_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:csj00020]
csj_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:csj00020]
csj_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:csj00020]
csj_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:csj00020]
Other DBs
GO: 0006099
Organism
Cronobacter sakazakii ATCC 29544 [GN:csj]
Gene
CSK29544_03922  type II citrate synthase [KO:K01647] [EC:2.3.3.1]
CSK29544_02873  aconitate hydratase [KO:K01681] [EC:4.2.1.3]
CSK29544_00139  bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
CSK29544_03555  isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
CSK29544_03917  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
CSK29544_03916  dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
CSK29544_00143  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
CSK29544_03914  succinyl-CoA synthetase subunit alpha [KO:K01902] [EC:6.2.1.5]
CSK29544_03915  succinyl-CoA synthetase subunit beta [KO:K01903] [EC:6.2.1.5]
CSK29544_03919  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CSK29544_03918  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CSK29544_03921  succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
CSK29544_03920  succinate dehydrogenase cytochrome b556 small membrane subunit [KO:K00242]
CSK29544_01441  succinate dehydrogenase flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
CSK29544_01440  fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
CSK29544_01439  fumarate reductase subunit C [KO:K00246]
CSK29544_01438  fumarate reductase subunit D [KO:K00247]
CSK29544_03246  fumarate hydratase class I [KO:K01676] [EC:4.2.1.2]
CSK29544_03245  fumarate hydratase [KO:K01679] [EC:4.2.1.2]
CSK29544_00599  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CSK29544_00767  malate:quinone oxidoreductase [KO:K00116] [EC:1.1.5.4]
CSK29544_01225  phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
CSK29544_00145  pyruvate dehydrogenase [KO:K00163] [EC:1.2.4.1]
CSK29544_00144  dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
CSK29544_02942  pyruvate-flavodoxin oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
csj00010  Glycolysis / Gluconeogenesis
csj00053  Ascorbate and aldarate metabolism
csj00061  Fatty acid biosynthesis
csj00071  Fatty acid degradation
csj00190  Oxidative phosphorylation
csj00220  Arginine biosynthesis
csj00250  Alanine, aspartate and glutamate metabolism
csj00280  Valine, leucine and isoleucine degradation
csj00350  Tyrosine metabolism
csj00470  D-Amino acid metabolism
csj00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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