KEGG   PATHWAY: csyr00030
Entry
csyr00030                   Pathway                                
Name
Pentose phosphate pathway - Carlito syrichta (Philippine tarsier)
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
csyr00030  Pentose phosphate pathway
csyr00030

Module
csyr_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:csyr00030]
csyr_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:csyr00030]
csyr_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:csyr00030]
csyr_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:csyr00030]
Other DBs
GO: 0006098
Organism
Carlito syrichta (Philippine tarsier) [GN:csyr]
Gene
103269859  GPI; glucose-6-phosphate isomerase isoform X1 [KO:K01810] [EC:5.3.1.9]
103255499  G6PD; glucose-6-phosphate 1-dehydrogenase [KO:K00036] [EC:1.1.1.49 1.1.1.363]
103250660  PGLS; 6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
103274437  H6PD; GDH/6PGL endoplasmic bifunctional protein [KO:K13937] [EC:1.1.1.47 3.1.1.31]
103267351  PGD; 6-phosphogluconate dehydrogenase, decarboxylating isoform X1 [KO:K00033] [EC:1.1.1.44 1.1.1.343]
103251759  RPE; ribulose-phosphate 3-epimerase isoform X1 [KO:K01783] [EC:5.1.3.1]
103255979  ribulose-phosphate 3-epimerase-like isoform X1 [KO:K01783] [EC:5.1.3.1]
103275723  ribulose-phosphate 3-epimerase-like [KO:K01783] [EC:5.1.3.1]
103254089  transketolase-like protein 1 [KO:K00615] [EC:2.2.1.1]
103254227  TKTL2; transketolase-like protein 2 [KO:K00615] [EC:2.2.1.1]
103256143  transketolase-like protein 1 [KO:K00615] [EC:2.2.1.1]
103268098  TKT; transketolase [KO:K00615] [EC:2.2.1.1]
103250664  TALDO1; transaldolase [KO:K00616] [EC:2.2.1.2]
103265475  LOW QUALITY PROTEIN: ribose-5-phosphate isomerase-like [KO:K01807] [EC:5.3.1.6]
103270066  ribose-5-phosphate isomerase [KO:K01807] [EC:5.3.1.6]
103263074  SHPK; sedoheptulokinase [KO:K11214] [EC:2.7.1.14]
103269988  DERA; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
103275341  RBKS; ribokinase isoform X1 [KO:K00852] [EC:2.7.1.15]
103262854  PGM1; phosphoglucomutase-1 [KO:K01835] [EC:5.4.2.2]
103270301  PGM2; phosphoglucomutase-2 [KO:K15779] [EC:5.4.2.2 5.4.2.7]
103260720  ribose-phosphate pyrophosphokinase 1-like [KO:K00948] [EC:2.7.6.1]
103275030  ribose-phosphate pyrophosphokinase 2 [KO:K00948] [EC:2.7.6.1]
103257225  ribose-phosphate pyrophosphokinase 1-like [KO:K00948] [EC:2.7.6.1]
103275447  PRPS1; ribose-phosphate pyrophosphokinase 1 isoform X1 [KO:K00948] [EC:2.7.6.1]
103262466  RGN; regucalcin isoform X1 [KO:K01053] [EC:3.1.1.17]
103275129  IDNK; probable gluconokinase [KO:K00851] [EC:2.7.1.12]
103255933  GLYCTK; glycerate kinase isoform X1 [KO:K11529] [EC:2.7.1.165]
103274194  ALDOA; fructose-bisphosphate aldolase A isoform X3 [KO:K01623] [EC:4.1.2.13]
103269126  ALDOC; fructose-bisphosphate aldolase C [KO:K01623] [EC:4.1.2.13]
103267208  ALDOB; fructose-bisphosphate aldolase B [KO:K01623] [EC:4.1.2.13]
103274033  FBP1; fructose-1,6-bisphosphatase 1 [KO:K03841] [EC:3.1.3.11]
103274034  FBP2; fructose-1,6-bisphosphatase isozyme 2 [KO:K03841] [EC:3.1.3.11]
103274254  fructose-1,6-bisphosphatase 1-like [KO:K03841] [EC:3.1.3.11]
103271763  PFKM; ATP-dependent 6-phosphofructokinase, muscle type isoform X2 [KO:K00850] [EC:2.7.1.11]
103254767  PFKP; ATP-dependent 6-phosphofructokinase, platelet type [KO:K00850] [EC:2.7.1.11]
103258747  PFKL; ATP-dependent 6-phosphofructokinase, liver type [KO:K00850] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
csyr00010  Glycolysis / Gluconeogenesis
csyr00040  Pentose and glucuronate interconversions
csyr00052  Galactose metabolism
csyr00230  Purine metabolism
csyr00240  Pyrimidine metabolism
csyr00340  Histidine metabolism
csyr00630  Glyoxylate and dicarboxylate metabolism
csyr00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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