KEGG   PATHWAY: cten00260
Entry
cten00260                   Pathway                                
Name
Glycine, serine and threonine metabolism - Yamadazyma tenuis
Description
Serine is derived from 3-phospho-D-glycerate, an intermediate of glycolysis [MD:M00020], and glycine is derived from serine. Threonine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, threonine is derived from aspartate [MD:M00018].
Class
Metabolism; Amino acid metabolism
Pathway map
cten00260  Glycine, serine and threonine metabolism
cten00260

Module
cten_M00018  Threonine biosynthesis, aspartate => homoserine => threonine [PATH:cten00260]
cten_M00020  Serine biosynthesis, glycerate-3P => serine [PATH:cten00260]
cten_M00338  Cysteine biosynthesis, homocysteine + serine => cysteine [PATH:cten00260]
cten_M00621  Glycine cleavage system [PATH:cten00260]
Other DBs
GO: 0006544 0006563 0070178 0006566
Organism
Yamadazyma tenuis [GN:cten]
Gene
CANTEDRAFT_113518  aspartate kinase [KO:K00928] [EC:2.7.2.4]
CANTEDRAFT_112316  aspartate-semialdehyde dehydrogenase [KO:K00133] [EC:1.2.1.11]
CANTEDRAFT_113448  hypothetical protein [KO:K00003] [EC:1.1.1.3]
CANTEDRAFT_106283  homoserine kinase [KO:K00872] [EC:2.7.1.39]
CANTEDRAFT_114716  tryptophan synthase beta subunit-like PLP-dependent enzyme [KO:K01733] [EC:4.2.3.1]
CANTEDRAFT_114831  hypothetical protein [KO:K01620] [EC:4.1.2.48]
CANTEDRAFT_114493  hypothetical protein [KO:K01620] [EC:4.1.2.48]
CANTEDRAFT_112774  hypothetical protein [KO:K00600] [EC:2.1.2.1]
CANTEDRAFT_113571  serine hydroxymethyltransferase mitochondrial precursor [KO:K00600] [EC:2.1.2.1]
CANTEDRAFT_113876  PLP-dependent transferase [KO:K00830] [EC:2.6.1.44 2.6.1.45 2.6.1.51]
CANTEDRAFT_116105  phosphoglycerate mutase [KO:K01834] [EC:5.4.2.11]
CANTEDRAFT_113977  phosphoglycerate mutase-like protein [KO:K01834] [EC:5.4.2.11]
CANTEDRAFT_112877  hypothetical protein [KO:K15634] [EC:5.4.2.11]
CANTEDRAFT_114989  P-loop containing nucleoside triphosphate hydrolase protein [KO:K15918] [EC:2.7.1.31]
CANTEDRAFT_116233  hypothetical protein [KO:K00058] [EC:1.1.1.95 1.1.1.399]
CANTEDRAFT_116001  3-phosphoserine transaminase [KO:K00831] [EC:2.6.1.52]
CANTEDRAFT_100918  hypothetical protein [KO:K01079] [EC:3.1.3.3]
CANTEDRAFT_104170  NAD(P)-binding protein [KO:K16066] [EC:1.1.1.381 1.1.1.-]
CANTEDRAFT_115865  NAD(P)-binding protein [KO:K16066] [EC:1.1.1.381 1.1.1.-]
CANTEDRAFT_95294  NAD(P)-binding protein [KO:K16066] [EC:1.1.1.381 1.1.1.-]
CANTEDRAFT_114653  hypothetical protein [KO:K00643] [EC:2.3.1.37]
CANTEDRAFT_101270  peroxisomal copper amine oxidase [KO:K00276] [EC:1.4.3.21]
CANTEDRAFT_127768  hypothetical protein [KO:K00276] [EC:1.4.3.21]
CANTEDRAFT_105303  hypothetical protein [KO:K00281] [EC:1.4.4.2]
CANTEDRAFT_131436  glycine cleavage system T protein [KO:K00605] [EC:2.1.2.10]
CANTEDRAFT_116801  dihydrolipoyl dehydrogenase mitochondrial precursor [KO:K00382] [EC:1.8.1.4]
CANTEDRAFT_114584  glycine cleavage system H protein [KO:K02437]
CANTEDRAFT_117799  FAD dependent oxidoreductase [KO:K00273] [EC:1.4.3.3]
CANTEDRAFT_123756  hypothetical protein [KO:K00273] [EC:1.4.3.3]
CANTEDRAFT_99486  D-aspartate oxidase [KO:K00273] [EC:1.4.3.3]
CANTEDRAFT_112937  hypothetical protein [KO:K00273] [EC:1.4.3.3]
CANTEDRAFT_123862  hypothetical protein [KO:K00273] [EC:1.4.3.3]
CANTEDRAFT_112279  CDP-diacylglycerol--serine O-phosphatidyltransferase [KO:K17103] [EC:2.7.8.8]
CANTEDRAFT_132638  FAD/NAD(P)-binding domain-containing protein [KO:K00306] [EC:1.5.3.1 1.5.3.7]
CANTEDRAFT_119918  FAD dependent oxidoreductase [KO:K00306] [EC:1.5.3.1 1.5.3.7]
CANTEDRAFT_137374  hypothetical protein [KO:K00306] [EC:1.5.3.1 1.5.3.7]
CANTEDRAFT_116454  nucleotide-binding domain-containing protein [KO:K00306] [EC:1.5.3.1 1.5.3.7]
CANTEDRAFT_113115  FAD dependent oxidoreductase [KO:K00306] [EC:1.5.3.1 1.5.3.7]
CANTEDRAFT_113491  cystathionine beta-synthase [KO:K01697] [EC:4.2.1.22]
CANTEDRAFT_113467  hypothetical protein [KO:K01758] [EC:4.4.1.1]
CANTEDRAFT_111687  hypothetical protein [KO:K01754] [EC:4.3.1.19]
CANTEDRAFT_96560  tryptophan synthase beta subunit-like PLP-dependent enzyme [KO:K17989] [EC:4.3.1.17 4.3.1.19]
CANTEDRAFT_101751  tryptophan synthase beta subunit-like PLP-dependent enzyme [KO:K17989] [EC:4.3.1.17 4.3.1.19]
CANTEDRAFT_112230  hypothetical protein [KO:K20498] [EC:4.3.1.18]
CANTEDRAFT_105087  hypothetical protein [KO:K01694] [EC:4.2.1.20]
Compound
C00011  CO2
C00014  Ammonia
C00022  Pyruvate
C00037  Glycine
C00048  Glyoxylate
C00049  L-Aspartate
C00065  L-Serine
C00078  L-Tryptophan
C00097  L-Cysteine
C00101  Tetrahydrofolate
C00109  2-Oxobutanoate
C00114  Choline
C00143  5,10-Methylenetetrahydrofolate
C00168  Hydroxypyruvate
C00188  L-Threonine
C00197  3-Phospho-D-glycerate
C00213  Sarcosine
C00258  D-Glycerate
C00263  L-Homoserine
C00300  Creatine
C00430  5-Aminolevulinate
C00441  L-Aspartate 4-semialdehyde
C00546  Methylglyoxal
C00576  Betaine aldehyde
C00581  Guanidinoacetate
C00631  2-Phospho-D-glycerate
C00719  Betaine
C00740  D-Serine
C00986  1,3-Diaminopropane
C01005  O-Phospho-L-serine
C01026  N,N-Dimethylglycine
C01102  O-Phospho-L-homoserine
C01242  [Protein]-S8-aminomethyldihydrolipoyllysine
C01888  Aminoacetone
C02051  Lipoylprotein
C02291  L-Cystathionine
C02737  Phosphatidylserine
C02972  Dihydrolipoylprotein
C03082  4-Phospho-L-aspartate
C03194  (R)-1-Aminopropan-2-ol
C03232  3-Phosphonooxypyruvate
C03283  L-2,4-Diaminobutanoate
C03508  L-2-Amino-3-oxobutanoic acid
C05519  L-Allothreonine
C06231  Ectoine
C06442  N(gamma)-Acetyldiaminobutyrate
C16432  5-Hydroxyectoine
C19929  N(alpha)-Acetyl-L-2,4-diaminobutyrate
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
PMID:11823218
  Authors
Kuhlmann AU, Bremer E.
  Title
Osmotically regulated synthesis of the compatible solute ectoine in Bacillus pasteurii and related Bacillus spp.
  Journal
Appl Environ Microbiol 68:772-83 (2002)
DOI:10.1128/AEM.68.2.772-783.2002
Reference
PMID:10473374
  Authors
Canovas D, Borges N, Vargas C, Ventosa A, Nieto JJ, Santos H.
  Title
Role of Ngamma-acetyldiaminobutyrate as an enzyme stabilizer and an intermediate in the biosynthesis of hydroxyectoine.
  Journal
Appl Environ Microbiol 65:3774-9 (1999)
DOI:10.1128/AEM.65.9.3774-3779.1999
Reference
PMID:17636255
  Authors
Bursy J, Pierik AJ, Pica N, Bremer E.
  Title
Osmotically induced synthesis of the compatible solute hydroxyectoine is mediated by an evolutionarily conserved ectoine hydroxylase.
  Journal
J Biol Chem 282:31147-55 (2007)
DOI:10.1074/jbc.M704023200
Reference
PMID:16707670
  Authors
Garcia-Estepa R, Argandona M, Reina-Bueno M, Capote N, Iglesias-Guerra F, Nieto JJ, Vargas C.
  Title
The ectD gene, which is involved in the synthesis of the compatible solute hydroxyectoine, is essential for thermoprotection of the halophilic bacterium Chromohalobacter salexigens.
  Journal
J Bacteriol 188:3774-84 (2006)
DOI:10.1128/JB.00136-06
Reference
PMID:15470257
  Authors
Arevalo-Rodriguez M, Pan X, Boeke JD, Heitman J
  Title
FKBP12 controls aspartate pathway flux in Saccharomyces cerevisiae to prevent toxic intermediate accumulation.
  Journal
Eukaryot Cell 3:1287-96 (2004)
DOI:10.1128/EC.3.5.1287-1296.2004
Reference
PMID:7639721
  Authors
Rees WD, Hay SM
  Title
The biosynthesis of threonine by mammalian cells: expression of a complete bacterial biosynthetic pathway in an animal cell.
  Journal
Biochem J 309 ( Pt 3):999-1007 (1995)
DOI:10.1042/bj3090999
Reference
PMID:11341914
  Authors
Jacques SL, Nieman C, Bareich D, Broadhead G, Kinach R, Honek JF, Wright GD
  Title
Characterization of yeast homoserine dehydrogenase, an antifungal target: the invariant histidine 309 is important for enzyme integrity.
  Journal
Biochim Biophys Acta 1544:28-41 (2001)
DOI:10.1016/S0167-4838(00)00203-X
Reference
PMID:15520012
  Authors
Chen X, Jhee KH, Kruger WD
  Title
Production of the neuromodulator H2S by cystathionine beta-synthase via the condensation of cysteine and homocysteine.
  Journal
J Biol Chem 279:52082-6 (2004)
DOI:10.1074/jbc.C400481200
Related
pathway
cten00010  Glycolysis / Gluconeogenesis
cten00020  Citrate cycle (TCA cycle)
cten00230  Purine metabolism
cten00250  Alanine, aspartate and glutamate metabolism
cten00270  Cysteine and methionine metabolism
cten00290  Valine, leucine and isoleucine biosynthesis
cten00300  Lysine biosynthesis
cten00330  Arginine and proline metabolism
cten00460  Cyanoamino acid metabolism
cten00470  D-Amino acid metabolism
cten00564  Glycerophospholipid metabolism
cten00600  Sphingolipid metabolism
cten00620  Pyruvate metabolism
cten00630  Glyoxylate and dicarboxylate metabolism
cten00640  Propanoate metabolism
cten00680  Methane metabolism
cten00860  Porphyrin metabolism
cten00920  Sulfur metabolism
KO pathway
ko00260   
LinkDB

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