KEGG   PATHWAY: cud00030
Entry
cud00030                    Pathway                                
Name
Pentose phosphate pathway - Cheilinus undulatus (humphead wrasse)
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cud00030  Pentose phosphate pathway
cud00030

Module
cud_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:cud00030]
cud_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:cud00030]
cud_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:cud00030]
cud_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:cud00030]
Other DBs
GO: 0006098
Organism
Cheilinus undulatus (humphead wrasse) [GN:cud]
Gene
121509525  gpib; glucose-6-phosphate isomerase b [KO:K01810] [EC:5.3.1.9]
121515149  glucose-6-phosphate isomerase-like [KO:K01810] [EC:5.3.1.9]
121517415  glucose-6-phosphate 1-dehydrogenase-like isoform X1 [KO:K00036] [EC:1.1.1.49 1.1.1.363]
121517472  g6pd; glucose-6-phosphate 1-dehydrogenase isoform X1 [KO:K00036] [EC:1.1.1.49 1.1.1.363]
121529496  pgls; 6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
121506743  h6pd; GDH/6PGL endoplasmic bifunctional protein [KO:K13937] [EC:1.1.1.47 3.1.1.31]
121517295  pgd; 6-phosphogluconate dehydrogenase, decarboxylating [KO:K00033] [EC:1.1.1.44 1.1.1.343]
121522696  rpe; ribulose-phosphate 3-epimerase [KO:K01783] [EC:5.1.3.1]
121507217  tkta; transketolase [KO:K00615] [EC:2.2.1.1]
121517686  tktb; transketolase-like protein 2 [KO:K00615] [EC:2.2.1.1]
121512150  taldo1; transaldolase [KO:K00616] [EC:2.2.1.2]
121526196  rpia; ribose-5-phosphate isomerase [KO:K01807] [EC:5.3.1.6]
121518420  shpk; sedoheptulokinase [KO:K11214] [EC:2.7.1.14]
121505257  dera; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
121526774  rbks; ribokinase isoform X1 [KO:K00852] [EC:2.7.1.15]
121512538  pgm1; phosphoglucomutase-1 [KO:K01835] [EC:5.4.2.2]
121520382  phosphoglucomutase-1-like [KO:K01835] [EC:5.4.2.2]
121509132  pgm2; phosphoglucomutase-2 [KO:K15779] [EC:5.4.2.2 5.4.2.7]
121506305  ribose-phosphate pyrophosphokinase 2 [KO:K00948] [EC:2.7.6.1]
121516537  ribose-phosphate pyrophosphokinase 1 isoform X1 [KO:K00948] [EC:2.7.6.1]
121506380  rgn; regucalcin [KO:K01053] [EC:3.1.1.17]
121510059  probable gluconokinase [KO:K00851] [EC:2.7.1.12]
121529577  glyctk; glycerate kinase isoform X1 [KO:K11529] [EC:2.7.1.165]
121518630  aldocb; fructose-bisphosphate aldolase C-B [KO:K01623] [EC:4.1.2.13]
121516773  aldob; fructose-bisphosphate aldolase B [KO:K01623] [EC:4.1.2.13]
121522672  aldoca; fructose-bisphosphate aldolase C-A [KO:K01623] [EC:4.1.2.13]
121528860  aldoab; aldolase a, fructose-bisphosphate, b [KO:K01623] [EC:4.1.2.13]
121509838  fructose-1,6-bisphosphatase 1-like [KO:K03841] [EC:3.1.3.11]
121509885  fbp2; fructose-1,6-bisphosphatase isozyme 2 [KO:K03841] [EC:3.1.3.11]
121524695  fbp1b; fructose-1,6-bisphosphatase 1b isoform X1 [KO:K03841] [EC:3.1.3.11]
121506840  pfkmb; phosphofructokinase, muscle b isoform X1 [KO:K00850] [EC:2.7.1.11]
121518172  pfkma; phosphofructokinase, muscle a [KO:K00850] [EC:2.7.1.11]
121519788  ATP-dependent 6-phosphofructokinase, platelet type-like isoform X1 [KO:K00850] [EC:2.7.1.11]
121527539  pfkpa; ATP-dependent 6-phosphofructokinase, platelet type isoform X1 [KO:K00850] [EC:2.7.1.11]
121522483  pfkla; ATP-dependent 6-phosphofructokinase, liver type isoform X1 [KO:K00850] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
cud00010  Glycolysis / Gluconeogenesis
cud00040  Pentose and glucuronate interconversions
cud00052  Galactose metabolism
cud00230  Purine metabolism
cud00240  Pyrimidine metabolism
cud00340  Histidine metabolism
cud00630  Glyoxylate and dicarboxylate metabolism
cud00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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