KEGG   PATHWAY: cwe00020
Entry
cwe00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Citrobacter werkmanii
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cwe00020  Citrate cycle (TCA cycle)
cwe00020

Module
cwe_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:cwe00020]
cwe_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cwe00020]
cwe_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cwe00020]
cwe_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cwe00020]
cwe_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cwe00020]
Other DBs
GO: 0006099
Organism
Citrobacter werkmanii [GN:cwe]
Gene
CO701_15265  gltA; citrate (Si)-synthase [KO:K01647] [EC:2.3.3.1]
CO701_09040  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
CO701_17805  acnB; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [KO:K01682] [EC:4.2.1.3 4.2.1.99]
CO701_12485  isocitrate dehydrogenase (NADP(+)) [KO:K00031] [EC:1.1.1.42]
CO701_15230  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
CO701_15225  dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
CO701_17825  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
CO701_15215  succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
CO701_15220  ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
CO701_15240  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
CO701_15235  sdhB; succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
CO701_15250  sdhC; succinate dehydrogenase cytochrome b556 large subunit [KO:K00241]
CO701_15245  sdhD; succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
CO701_19700  fumarate reductase (quinol) flavoprotein subunit [KO:K00244] [EC:1.3.5.1]
CO701_19705  succinate dehydrogenase/fumarate reductase iron-sulfur subunit [KO:K00245] [EC:1.3.5.1]
CO701_19710  fumarate reductase subunit FrdC [KO:K00246]
CO701_19715  fumarate reductase subunit FrdD [KO:K00247]
CO701_10850  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
CO701_15190  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
CO701_19960  fumarate hydratase [KO:K01676] [EC:4.2.1.2]
CO701_10845  fumC; fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
CO701_11315  fumarate hydratase FumD [KO:K01675] [EC:4.2.1.2]
CO701_02530  transcriptional regulator [KO:K01774] [EC:4.2.1.2]
CO701_00330  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
CO701_06790  mqo; malate dehydrogenase (quinone) [KO:K00116] [EC:1.1.5.4]
CO701_23750  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
CO701_17835  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
CO701_17830  aceF; pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
CO701_09670  nifJ; pyruvate:ferredoxin (flavodoxin) oxidoreductase [KO:K03737] [EC:1.2.7.1 1.2.7.-]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cwe00010  Glycolysis / Gluconeogenesis
cwe00053  Ascorbate and aldarate metabolism
cwe00061  Fatty acid biosynthesis
cwe00071  Fatty acid degradation
cwe00190  Oxidative phosphorylation
cwe00220  Arginine biosynthesis
cwe00250  Alanine, aspartate and glutamate metabolism
cwe00280  Valine, leucine and isoleucine degradation
cwe00350  Tyrosine metabolism
cwe00470  D-Amino acid metabolism
cwe00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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