KEGG   PATHWAY: cyq00020
Entry
cyq00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Cycloclasticus sp. P1
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
cyq00020  Citrate cycle (TCA cycle)
cyq00020

Module
cyq_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:cyq00020]
cyq_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:cyq00020]
cyq_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:cyq00020]
cyq_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:cyq00020]
Other DBs
GO: 0006099
Organism
Cycloclasticus sp. P1 [GN:cyq]
Gene
Q91_0050  citrate synthase I [KO:K01647] [EC:2.3.3.1]
Q91_1423  Citrate synthase-like protein [KO:K01647] [EC:2.3.3.1]
Q91_1187  Citrate synthase I [KO:K01647] [EC:2.3.3.1]
Q91_1092  Aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Q91_1570  Isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
Q91_1419  sucA; Oxoglutarate dehydrogenase, E1 component [KO:K00164] [EC:1.2.4.2]
Q91_1420  Dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (Succinyl-transferring) complex [KO:K00658] [EC:2.3.1.61]
Q91_1421  lpdA2; 2-oxoglutarate dehydrogenase, E3 component, lipoamide dehydrogen ase [KO:K00382] [EC:1.8.1.4]
Q91_1906  dihydrolipoamide dehydrogenase protein [KO:K00382] [EC:1.8.1.4]
Q91_0297  Succinyl-CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
Q91_0296  sucC; Succinyl-CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
Q91_1064  sdhA; Succinate dehydrogenase subunit A [KO:K00239] [EC:1.3.5.1]
Q91_0872  Fumarate reductase/succinate dehydrogenase flavoprotein domain protein [KO:K00239] [EC:1.3.5.1]
Q91_1065  sdhB; Succinate dehydrogenase, iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Q91_1062  Succinate dehydrogenase cytochrome b556 subunit [KO:K00241]
Q91_1063  Succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
Q91_1428  fumarate hydratase class I, aerobic [KO:K01676] [EC:4.2.1.2]
Q91_1444  mdh; Malate dehydrogenase 1 [KO:K00024] [EC:1.1.1.37]
Q91_1439  pckA; Phosphoenolpyruvate carboxykinase [KO:K01610] [EC:4.1.1.49]
Q91_1908  aceE; Pyruvate dehydrogenase, homodimeric type [KO:K00163] [EC:1.2.4.1]
Q91_1907  aceF; Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
cyq00010  Glycolysis / Gluconeogenesis
cyq00061  Fatty acid biosynthesis
cyq00071  Fatty acid degradation
cyq00190  Oxidative phosphorylation
cyq00220  Arginine biosynthesis
cyq00250  Alanine, aspartate and glutamate metabolism
cyq00280  Valine, leucine and isoleucine degradation
cyq00350  Tyrosine metabolism
cyq00470  D-Amino acid metabolism
cyq00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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