KEGG   PATHWAY: dac00020
Entry
dac00020                    Pathway                                
Name
Citrate cycle (TCA cycle) - Delftia acidovorans
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
dac00020  Citrate cycle (TCA cycle)
dac00020

Module
dac_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:dac00020]
dac_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:dac00020]
dac_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:dac00020]
dac_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:dac00020]
dac_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:dac00020]
Other DBs
GO: 0006099
Organism
Delftia acidovorans [GN:dac]
Gene
Daci_0799  conserved hypothetical protein [KO:K01647] [EC:2.3.3.1]
Daci_2422  citrate synthase I [KO:K01647] [EC:2.3.3.1]
Daci_4908  Citrate synthase [KO:K01647] [EC:2.3.3.1]
Daci_4555  aconitate hydratase domain protein [KO:K01681] [EC:4.2.1.3]
Daci_2441  aconitate hydratase 1 [KO:K01681] [EC:4.2.1.3]
Daci_2433  aconitate hydratase 2 [KO:K01682] [EC:4.2.1.3 4.2.1.99]
Daci_3645  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Daci_3661  isocitrate dehydrogenase, NADP-dependent [KO:K00031] [EC:1.1.1.42]
Daci_3493  2-oxoglutarate dehydrogenase, E1 subunit [KO:K00164] [EC:1.2.4.2]
Daci_3494  2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase [KO:K00658] [EC:2.3.1.61]
Daci_4018  pyridine nucleotide-disulphide oxidoreductase dimerisation region [KO:K00382] [EC:1.8.1.4]
Daci_3978  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Daci_3495  dihydrolipoamide dehydrogenase [KO:K00382] [EC:1.8.1.4]
Daci_0868  succinyl-CoA synthetase, alpha subunit [KO:K01902] [EC:6.2.1.5]
Daci_0869  succinyl-CoA synthetase, beta subunit [KO:K01903] [EC:6.2.1.5]
Daci_0085  succinate CoA transferase [KO:K18118] [EC:2.8.3.18]
Daci_2425  succinate dehydrogenase, flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
Daci_2424  succinate dehydrogenase and fumarate reductase iron-sulfur protein [KO:K00240] [EC:1.3.5.1]
Daci_2427  succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
Daci_2426  succinate dehydrogenase, hydrophobic membrane anchor protein [KO:K00242]
Daci_2654  hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit [KO:K01676] [EC:4.2.1.2]
Daci_2655  fumarate hydratase, class II [KO:K01679] [EC:4.2.1.2]
Daci_1437  fumarate lyase [KO:K01679] [EC:4.2.1.2]
Daci_2429  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
Daci_0114  Phosphoenolpyruvate carboxykinase (GTP) [KO:K01596] [EC:4.1.1.32]
Daci_2498  2-oxo-acid dehydrogenase E1 subunit, homodimeric type [KO:K00163] [EC:1.2.4.1]
Daci_3980  2-oxo-acid dehydrogenase E1 subunit, homodimeric type [KO:K00163] [EC:1.2.4.1]
Daci_3979  pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
dac00010  Glycolysis / Gluconeogenesis
dac00053  Ascorbate and aldarate metabolism
dac00061  Fatty acid biosynthesis
dac00071  Fatty acid degradation
dac00190  Oxidative phosphorylation
dac00220  Arginine biosynthesis
dac00250  Alanine, aspartate and glutamate metabolism
dac00280  Valine, leucine and isoleucine degradation
dac00350  Tyrosine metabolism
dac00470  D-Amino acid metabolism
dac00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

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