KEGG   PATHWAY: dein00020
Entry
dein00020                   Pathway                                
Name
Citrate cycle (TCA cycle) - Deinococcus sp. AJ005
Description
The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].
Class
Metabolism; Carbohydrate metabolism
Pathway map
dein00020  Citrate cycle (TCA cycle)
dein00020

Module
dein_M00003  Gluconeogenesis, oxaloacetate => fructose-6P [PATH:dein00020]
dein_M00009  Citrate cycle (TCA cycle, Krebs cycle) [PATH:dein00020]
dein_M00010  Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH:dein00020]
dein_M00011  Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH:dein00020]
dein_M00307  Pyruvate oxidation, pyruvate => acetyl-CoA [PATH:dein00020]
Other DBs
GO: 0006099
Organism
Deinococcus sp. AJ005 [GN:dein]
Gene
DAAJ005_14590  citrate synthase [KO:K01647] [EC:2.3.3.1]
DAAJ005_12175  acnA; aconitate hydratase AcnA [KO:K01681] [EC:4.2.1.3]
DAAJ005_09265  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
DAAJ005_05595  NADP-dependent isocitrate dehydrogenase [KO:K00031] [EC:1.1.1.42]
DAAJ005_02375  2-oxoglutarate dehydrogenase E1 component [KO:K00164] [EC:1.2.4.2]
DAAJ005_06055  odhB; 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase [KO:K00658] [EC:2.3.1.61]
DAAJ005_04305  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DAAJ005_05800  lpdA; dihydrolipoyl dehydrogenase [KO:K00382] [EC:1.8.1.4]
DAAJ005_09910  sucD; succinate--CoA ligase subunit alpha [KO:K01902] [EC:6.2.1.5]
DAAJ005_09915  sucC; ADP-forming succinate--CoA ligase subunit beta [KO:K01903] [EC:6.2.1.5]
DAAJ005_11630  succinate dehydrogenase flavoprotein subunit [KO:K00239] [EC:1.3.5.1]
DAAJ005_11625  succinate dehydrogenase iron-sulfur subunit [KO:K00240] [EC:1.3.5.1]
DAAJ005_11640  sdhC; succinate dehydrogenase, cytochrome b556 subunit [KO:K00241]
DAAJ005_11635  succinate dehydrogenase hydrophobic membrane anchor subunit [KO:K00242]
DAAJ005_02295  fumC; class II fumarate hydratase [KO:K01679] [EC:4.2.1.2]
DAAJ005_17085  malate dehydrogenase [KO:K00024] [EC:1.1.1.37]
DAAJ005_11320  pckA; phosphoenolpyruvate carboxykinase (ATP) [KO:K01610] [EC:4.1.1.49]
DAAJ005_17895  aceE; pyruvate dehydrogenase (acetyl-transferring), homodimeric type [KO:K00163] [EC:1.2.4.1]
DAAJ005_14925  pdhA; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha [KO:K00161] [EC:1.2.4.1]
DAAJ005_14920  alpha-ketoacid dehydrogenase subunit beta [KO:K00162] [EC:1.2.4.1]
DAAJ005_17900  dihydrolipoyllysine-residue acetyltransferase [KO:K00627] [EC:2.3.1.12]
Compound
C00022  Pyruvate
C00024  Acetyl-CoA
C00026  2-Oxoglutarate
C00036  Oxaloacetate
C00042  Succinate
C00068  Thiamin diphosphate
C00074  Phosphoenolpyruvate
C00091  Succinyl-CoA
C00122  Fumarate
C00149  (S)-Malate
C00158  Citrate
C00311  Isocitrate
C00417  cis-Aconitate
C05125  2-(alpha-Hydroxyethyl)thiamine diphosphate
C05379  Oxalosuccinate
C05381  3-Carboxy-1-hydroxypropyl-ThPP
C15972  Enzyme N6-(lipoyl)lysine
C15973  Enzyme N6-(dihydrolipoyl)lysine
C16254  [Dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine
C16255  [Dihydrolipoyllysine-residue acetyltransferase] S-acetyldihydrolipoyllysine
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Related
pathway
dein00010  Glycolysis / Gluconeogenesis
dein00053  Ascorbate and aldarate metabolism
dein00061  Fatty acid biosynthesis
dein00071  Fatty acid degradation
dein00190  Oxidative phosphorylation
dein00220  Arginine biosynthesis
dein00250  Alanine, aspartate and glutamate metabolism
dein00280  Valine, leucine and isoleucine degradation
dein00350  Tyrosine metabolism
dein00470  D-Amino acid metabolism
dein00630  Glyoxylate and dicarboxylate metabolism
KO pathway
ko00020   
LinkDB

DBGET integrated database retrieval system