KEGG   PATHWAY: dle00030
Entry
dle00030                    Pathway                                
Name
Pentose phosphate pathway - Delphinapterus leucas (beluga whale)
Description
The pentose phosphate pathway is a process of glucose turnover that produces NADPH as reducing equivalents and pentoses as essential parts of nucleotides. There are two different phases in the pathway. One is irreversible oxidative phase in which glucose-6P is converted to ribulose-5P by oxidative decarboxylation, and NADPH is generated [MD:M00006]. The other is reversible non-oxidative phase in which phosphorylated sugars are interconverted to generate xylulose-5P, ribulose-5P, and ribose-5P [MD:M00007]. Phosphoribosyl pyrophosphate (PRPP) formed from ribose-5P [MD:M00005] is an activated compound used in the biosynthesis of histidine and purine/pyrimidine nucleotides. This pathway map also shows the Entner-Doudoroff pathway where 6-P-gluconate is dehydrated and then cleaved into pyruvate and glyceraldehyde-3P [MD:M00008].
Class
Metabolism; Carbohydrate metabolism
Pathway map
dle00030  Pentose phosphate pathway
dle00030

Module
dle_M00004  Pentose phosphate pathway (Pentose phosphate cycle) [PATH:dle00030]
dle_M00005  PRPP biosynthesis, ribose 5P => PRPP [PATH:dle00030]
dle_M00006  Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH:dle00030]
dle_M00007  Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH:dle00030]
Other DBs
GO: 0006098
Organism
Delphinapterus leucas (beluga whale) [GN:dle]
Gene
111180920  GPI; glucose-6-phosphate isomerase [KO:K01810] [EC:5.3.1.9]
111170968  G6PD; glucose-6-phosphate 1-dehydrogenase isoform X1 [KO:K00036] [EC:1.1.1.49 1.1.1.363]
111166684  PGLS; 6-phosphogluconolactonase [KO:K01057] [EC:3.1.1.31]
111187044  H6PD; GDH/6PGL endoplasmic bifunctional protein isoform X1 [KO:K13937] [EC:1.1.1.47 3.1.1.31]
111187279  6-phosphogluconate dehydrogenase, decarboxylating [KO:K00033] [EC:1.1.1.44 1.1.1.343]
111182490  LOW QUALITY PROTEIN: ribulose-phosphate 3-epimerase-like [KO:K01783] [EC:5.1.3.1]
111171785  RPE; ribulose-phosphate 3-epimerase isoform X1 [KO:K01783] [EC:5.1.3.1]
111187721  ribulose-phosphate 3-epimerase-like [KO:K01783] [EC:5.1.3.1]
111174285  TKT; transketolase [KO:K00615] [EC:2.2.1.1]
111170596  TKTL1; transketolase-like protein 1 [KO:K00615] [EC:2.2.1.1]
111178992  TKTL2; LOW QUALITY PROTEIN: transketolase-like protein 2 [KO:K00615] [EC:2.2.1.1]
111170292  TALDO1; transaldolase isoform X1 [KO:K00616] [EC:2.2.1.2]
111187456  RPIA; ribose-5-phosphate isomerase isoform X1 [KO:K01807] [EC:5.3.1.6]
111185758  SHPK; sedoheptulokinase [KO:K11214] [EC:2.7.1.14]
111176808  DERA; deoxyribose-phosphate aldolase [KO:K01619] [EC:4.1.2.4]
111174933  RBKS; ribokinase isoform X1 [KO:K00852] [EC:2.7.1.15]
111178466  PGM1; phosphoglucomutase-1 isoform X1 [KO:K01835] [EC:5.4.2.2]
111170717  PGM2; phosphoglucomutase-2 [KO:K15779] [EC:5.4.2.2 5.4.2.7]
111183069  PRPS1L1; LOW QUALITY PROTEIN: ribose-phosphate pyrophosphokinase 3 [KO:K00948] [EC:2.7.6.1]
111167213  PRPS2; ribose-phosphate pyrophosphokinase 2 isoform X1 [KO:K00948] [EC:2.7.6.1]
111165768  PRPS1; ribose-phosphate pyrophosphokinase 1 [KO:K00948] [EC:2.7.6.1]
111165549  RGN; regucalcin [KO:K01053] [EC:3.1.1.17]
111166810  IDNK; probable gluconokinase isoform X1 [KO:K00851] [EC:2.7.1.12]
111174314  GLYCTK; glycerate kinase isoform X1 [KO:K11529] [EC:2.7.1.165]
111185851  ALDOC; fructose-bisphosphate aldolase C [KO:K01623] [EC:4.1.2.13]
111182176  ALDOA; fructose-bisphosphate aldolase A [KO:K01623] [EC:4.1.2.13]
111188054  ALDOB; fructose-bisphosphate aldolase B [KO:K01623] [EC:4.1.2.13]
111166806  FBP1; fructose-1,6-bisphosphatase 1 isoform X1 [KO:K03841] [EC:3.1.3.11]
111166817  FBP2; fructose-1,6-bisphosphatase isozyme 2 [KO:K03841] [EC:3.1.3.11]
111186309  PFKL; ATP-dependent 6-phosphofructokinase, liver type [KO:K00850] [EC:2.7.1.11]
111174038  PFKM; ATP-dependent 6-phosphofructokinase, muscle type isoform X1 [KO:K00850] [EC:2.7.1.11]
111164750  PFKP; ATP-dependent 6-phosphofructokinase, platelet type isoform X1 [KO:K00850] [EC:2.7.1.11]
Compound
C00022  Pyruvate
C00031  D-Glucose
C00085  D-Fructose 6-phosphate
C00117  D-Ribose 5-phosphate
C00118  D-Glyceraldehyde 3-phosphate
C00119  5-Phospho-alpha-D-ribose 1-diphosphate
C00121  D-Ribose
C00197  3-Phospho-D-glycerate
C00198  D-Glucono-1,5-lactone
C00199  D-Ribulose 5-phosphate
C00204  2-Dehydro-3-deoxy-D-gluconate
C00221  beta-D-Glucose
C00231  D-Xylulose 5-phosphate
C00257  D-Gluconic acid
C00258  D-Glycerate
C00279  D-Erythrose 4-phosphate
C00345  6-Phospho-D-gluconate
C00354  D-Fructose 1,6-bisphosphate
C00577  D-Glyceraldehyde
C00620  alpha-D-Ribose 1-phosphate
C00631  2-Phospho-D-glycerate
C00668  alpha-D-Glucose 6-phosphate
C00672  2-Deoxy-D-ribose 1-phosphate
C00673  2-Deoxy-D-ribose 5-phosphate
C01151  D-Ribose 1,5-bisphosphate
C01172  beta-D-Glucose 6-phosphate
C01182  D-Ribulose 1,5-bisphosphate
C01218  6-Phospho-2-dehydro-D-gluconate
C01236  D-Glucono-1,5-lactone 6-phosphate
C01801  Deoxyribose
C02076  Sedoheptulose
C03752  2-Amino-2-deoxy-D-gluconate
C04442  2-Dehydro-3-deoxy-6-phospho-D-gluconate
C05382  Sedoheptulose 7-phosphate
C06019  D-arabino-Hex-3-ulose 6-phosphate
C06473  2-Keto-D-gluconic acid
C20589  D-Glucosaminate-6-phosphate
Reference
  Authors
Nishizuka Y (ed).
  Title
[Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1980)
Reference
  Authors
Nishizuka Y, Seyama Y, Ikai A, Ishimura Y, Kawaguchi A (eds).
  Title
[Cellular Functions and Metabolic Maps] (In Japanese)
  Journal
Tokyo Kagaku Dojin (1997)
Reference
  Authors
Michal G.
  Title
Biochemical Pathways
  Journal
Wiley (1999)
Reference
  Authors
Hove-Jensen B, Rosenkrantz TJ, Haldimann A, Wanner BL.
  Title
Escherichia coli phnN, encoding ribose 1,5-bisphosphokinase activity (phosphoribosyl diphosphate forming): dual role in phosphonate degradation and NAD biosynthesis pathways.
  Journal
J Bacteriol 185:2793-801 (2003)
DOI:10.1128/JB.185.9.2793-2801.2003
Reference
  Authors
Orita I, Sato T, Yurimoto H, Kato N, Atomi H, Imanaka T, Sakai Y
  Title
The ribulose monophosphate pathway substitutes for the missing pentose phosphate pathway in the archaeon Thermococcus kodakaraensis.
  Journal
J Bacteriol 188:4698-704 (2006)
DOI:10.1128/JB.00492-06
Reference
  Authors
Kato N, Yurimoto H, Thauer RK
  Title
The physiological role of the ribulose monophosphate pathway in bacteria and archaea.
  Journal
Biosci Biotechnol Biochem 70:10-21 (2006)
DOI:10.1271/bbb.70.10
Reference
  Authors
Kouril T, Wieloch P, Reimann J, Wagner M, Zaparty M, Albers SV, Schomburg D, Ruoff P, Siebers B
  Title
Unraveling the function of the two Entner-Doudoroff branches in the thermoacidophilic Crenarchaeon Sulfolobus solfataricus P2.
  Journal
FEBS J 280:1126-38 (2013)
DOI:10.1111/febs.12106
Reference
  Authors
Reher M, Schonheit P
  Title
Glyceraldehyde dehydrogenases from the thermoacidophilic euryarchaeota Picrophilus torridus and Thermoplasma acidophilum, key enzymes of the non-phosphorylative Entner-Doudoroff pathway, constitute a novel enzyme family within the aldehyde dehydrogenase superfamily.
  Journal
FEBS Lett 580:1198-204 (2006)
DOI:10.1016/j.febslet.2006.01.029
Reference
  Authors
Reher M, Fuhrer T, Bott M, Schonheit P
  Title
The nonphosphorylative Entner-Doudoroff pathway in the thermoacidophilic euryarchaeon Picrophilus torridus involves a novel 2-keto-3-deoxygluconate- specific aldolase.
  Journal
J Bacteriol 192:964-74 (2010)
DOI:10.1128/JB.01281-09
Related
pathway
dle00010  Glycolysis / Gluconeogenesis
dle00040  Pentose and glucuronate interconversions
dle00052  Galactose metabolism
dle00230  Purine metabolism
dle00240  Pyrimidine metabolism
dle00340  Histidine metabolism
dle00630  Glyoxylate and dicarboxylate metabolism
dle00750  Vitamin B6 metabolism
KO pathway
ko00030   
LinkDB

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